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Sample GSM920074 Query DataSets for GSM920074
Status Public on Dec 10, 2012
Title Hypertensive nephropathy [H2-Tub-HT13]
Sample type RNA
 
Source name Kidney Biopsy from Human Hypertensive nephropathy
Organism Homo sapiens
Characteristics tissue: Tubulointerstitium from kidney biopsy
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Rneasy kit (Qiagen) following manufacturer's protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, Affymetrix).
 
Hybridization protocol According to the Affymetrix Expression Analysis Technical Manual.
Scan protocol GeneChip arrays were scanned by GeneChip Scanner 3000 7G according to the Affymetrix Expression Analysis Technical Manual.
Description Gene Expression data from the tubulointerstitial compartment of human Hypertensive nephropathy kidney
Data processing The data were analyzed using GenePattern pipeline: RMA method and Human Entrez Gene custom CDF annotation version 10 was used for the normalization
Each of the hybridization was normalized seperately and the VALUE column contains the batch-corrected data using Combat
 
Submission date Apr 20, 2012
Last update date Dec 11, 2012
Contact name Viji Nair
E-mail(s) vijin@med.umich.edu
Organization name University of Michigan
Street address 1152 West Medical Centre Dr.
City Ann Arbor
ZIP/Postal code 48331
Country USA
 
Platform ID GPL14663
Series (2)
GSE37455 Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis[Tubulointerstitial]
GSE37463 Cross-species transcriptional network analysis defines shared inflammatory responses in murine and human lupus nephritis

Data table header descriptions
ID_REF
VALUE Entrez Gene IDs and Log base 2 expression values

Data table
ID_REF VALUE
2 8.760199296
9 7.817897715
10 5.86528428
12 7.742288148
13 5.203720251
14 8.242557932
15 4.290190007
16 8.740868657
18 9.964885262
19 8.837353119
20 5.181124359
21 5.653006918
22 7.387754471
23 8.014997277
24 5.580490456
25 7.438097156
26 11.94666035
27 5.040618162
28 5.330446085
29 6.495893494

Total number of rows: 12020

Table truncated, full table size 204 Kbytes.




Supplementary file Size Download File type/resource
GSM920074_H2-Tub-HT13.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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