GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM923570 Query DataSets for GSM923570
Status Public on Apr 30, 2012
Title PSU_ChipSeq_G1E_CTCF
Sample type SRA
Source name G1E
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: G1E
cell organism: mouse
cell description: Gata1- erythroid progenitor
cell sex: M
antibody: CTCF
antibody antibodydescription: rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
age: E0
age description: Embryonic day 0 (stem cell)
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001916
replicate: 1
strain: 129
strain description: Strain 129, has widely available embryonic stem cells
Biomaterial provider Mitch Weiss lab
Growth protocol G1E_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36029 Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51338 Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
SRA SRX145050
BioSample SAMN00990255
Named Annotation GSM923570_mm9_wgEncodePsuTfbsG1eCtcfME0S129InputRepSignalRep1.bigWig
Named Annotation GSM923570_mm9_wgEncodePsuTfbsG1eCtcfME0S129InputRepSignalRep2.bigWig
Named Annotation GSM923570_mm9_wgEncodePsuTfbsG1eCtcfME0S129InputSig.bigWig

Supplementary file Size Download File type/resource
GSM923570_mm9_wgEncodePsuTfbsG1eCtcfME0S129InputPk.broadPeak.gz 291.2 Kb (ftp)(http) BROADPEAK
GSM923570_mm9_wgEncodePsuTfbsG1eCtcfME0S129InputRepPeaksRep1.broadPeak.gz 272.6 Kb (ftp)(http) BROADPEAK
GSM923570_mm9_wgEncodePsuTfbsG1eCtcfME0S129InputRepPeaksRep2.broadPeak.gz 218.0 Kb (ftp)(http) BROADPEAK
GSM923570_mm9_wgEncodePsuTfbsG1eCtcfME0S129InputRepSignalRep1.bigWig 2.4 Gb (ftp)(http) BIGWIG
GSM923570_mm9_wgEncodePsuTfbsG1eCtcfME0S129InputRepSignalRep2.bigWig 2.9 Gb (ftp)(http) BIGWIG
GSM923570_mm9_wgEncodePsuTfbsG1eCtcfME0S129InputSig.bigWig 3.8 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap