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Sample GSM923577 Query DataSets for GSM923577
Status Public on Apr 30, 2012
Title PSU_ChipSeq_MEL_Pol2-4H8
Sample type SRA
Source name MEL
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: U
antibody: Pol2-4H8
antibody antibodydescription: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL24H8
antibody targetdescription: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes
antibody vendorname: Abcam
antibody vendorid: ab5408
age: immortalized
age description: Immortal cells
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001929
replicate: 1
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36029 Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX145057
BioSample SAMN00990262
Named Annotation GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputRepSignalRep1.bigWig
Named Annotation GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputRepSignalRep2.bigWig
Named Annotation GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputSig.bigWig

Supplementary file Size Download File type/resource
GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputPk.broadPeak.gz 331.8 Kb (ftp)(http) BROADPEAK
GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputRepPeaksRep1.broadPeak.gz 738.6 Kb (ftp)(http) BROADPEAK
GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputRepPeaksRep2.broadPeak.gz 119.3 Kb (ftp)(http) BROADPEAK
GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputRepSignalRep1.bigWig 2.3 Gb (ftp)(http) BIGWIG
GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputRepSignalRep2.bigWig 2.2 Gb (ftp)(http) BIGWIG
GSM923577_mm9_wgEncodePsuTfbsMelPol24h8UImmortalC57bl6InputSig.bigWig 4.0 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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