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Sample GSM923586 Query DataSets for GSM923586
Status Public on Apr 30, 2012
Title PSU_ChipSeq_Megakaryo_GATA1_(SC-265)
Sample type SRA
Source name Megakaryo
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Megakaryo
cell organism: mouse
cell description: Megakaryocyte
cell sex: B
antibody: GATA1_(SC-265)
antibody antibodydescription: rat monoclonal antibody raised against mouse recombinant GATA1; recommended for detection of GATA1 of mouse, rat and human origin. Antibody Target: GATA1
antibody targetdescription: GATA1 is erythroid-specific and is responsible for the regulated transcription of erythroid genes.
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-265
age: E14.5
age description: Embryonic day 14.5
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM002352
replicate: 1
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
Biomaterial provider Mitch Weiss lab
Growth protocol Megakaryocyte_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (4)
GSE36029 Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51337 Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis
SRA SRX145066
BioSample SAMN00990271
Named Annotation GSM923586_mm9_wgEncodePsuTfbsMegakaryoGata1aBE14halfCd1InputRepSignalRep1.bigWig
Named Annotation GSM923586_mm9_wgEncodePsuTfbsMegakaryoGata1aBE14halfCd1InputRepSignalRep2.bigWig
Named Annotation GSM923586_mm9_wgEncodePsuTfbsMegakaryoGata1aBE14halfCd1InputRepSignalRep3.bigWig
Named Annotation GSM923586_mm9_wgEncodePsuTfbsMegakaryoGata1aBE14halfCd1InputSigV2.bigWig

Supplementary file Size Download File type/resource
GSM923586_mm9_wgEncodePsuTfbsMegakaryoGata1aBE14halfCd1InputPkV2.broadPeak.gz 90.1 Kb (ftp)(http) BROADPEAK
GSM923586_mm9_wgEncodePsuTfbsMegakaryoGata1aBE14halfCd1InputRepPeaksRep1.broadPeak.gz 84.3 Kb (ftp)(http) BROADPEAK
GSM923586_mm9_wgEncodePsuTfbsMegakaryoGata1aBE14halfCd1InputRepPeaksRep2.broadPeak.gz 152.3 Kb (ftp)(http) BROADPEAK
GSM923586_mm9_wgEncodePsuTfbsMegakaryoGata1aBE14halfCd1InputRepPeaksRep3.broadPeak.gz 21.6 Kb (ftp)(http) BROADPEAK
GSM923586_mm9_wgEncodePsuTfbsMegakaryoGata1aBE14halfCd1InputRepSignalRep1.bigWig 3.0 Gb (ftp)(http) BIGWIG
GSM923586_mm9_wgEncodePsuTfbsMegakaryoGata1aBE14halfCd1InputRepSignalRep2.bigWig 4.8 Gb (ftp)(http) BIGWIG
GSM923586_mm9_wgEncodePsuTfbsMegakaryoGata1aBE14halfCd1InputRepSignalRep3.bigWig 3.1 Gb (ftp)(http) BIGWIG
GSM923586_mm9_wgEncodePsuTfbsMegakaryoGata1aBE14halfCd1InputSigV2.bigWig 5.4 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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