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Sample GSM923590 Query DataSets for GSM923590
Status Public on Apr 30, 2012
Title PSU_ChipSeq_G1E-ER4_Pol2-4H8
Sample type SRA
Source name G1E-ER4
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: G1E-ER4
cell organism: mouse
cell description: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)
cell sex: M
antibody: Pol2-4H8
antibody antibodydescription: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL24H8
antibody targetdescription: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes
antibody vendorname: Abcam
antibody vendorid: ab5408
age: E0
age description: Embryonic day 0 (stem cell)
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001921
replicate: 1
strain: 129
strain description: Strain 129, has widely available embryonic stem cells
Biomaterial provider Mitch Weiss lab
Treatment protocol diffProtD_24hr
Growth protocol G1E_ER4_E2_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36029 Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51338 Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
SRA SRX145070
BioSample SAMN00990275
Named Annotation GSM923590_mm9_wgEncodePsuTfbsG1eer4e2Pol24h8ME0S129InputRepSignalRep1.bigWig
Named Annotation GSM923590_mm9_wgEncodePsuTfbsG1eer4e2Pol24h8ME0S129InputRepSignalRep2.bigWig
Named Annotation GSM923590_mm9_wgEncodePsuTfbsG1eer4e2Pol24h8ME0S129InputRepSignalRep3.bigWig
Named Annotation GSM923590_mm9_wgEncodePsuTfbsG1eer4e2Pol24h8ME0S129InputSig.bigWig

Supplementary file Size Download File type/resource
GSM923590_mm9_wgEncodePsuTfbsG1eer4e2Pol24h8ME0S129InputPk.broadPeak.gz 91.0 Kb (ftp)(http) BROADPEAK
GSM923590_mm9_wgEncodePsuTfbsG1eer4e2Pol24h8ME0S129InputRepPeaksRep1.broadPeak.gz 68.1 Kb (ftp)(http) BROADPEAK
GSM923590_mm9_wgEncodePsuTfbsG1eer4e2Pol24h8ME0S129InputRepPeaksRep2.broadPeak.gz 50.2 Kb (ftp)(http) BROADPEAK
GSM923590_mm9_wgEncodePsuTfbsG1eer4e2Pol24h8ME0S129InputRepPeaksRep3.broadPeak.gz 32.4 Kb (ftp)(http) BROADPEAK
GSM923590_mm9_wgEncodePsuTfbsG1eer4e2Pol24h8ME0S129InputRepSignalRep1.bigWig 1.2 Gb (ftp)(http) BIGWIG
GSM923590_mm9_wgEncodePsuTfbsG1eer4e2Pol24h8ME0S129InputRepSignalRep2.bigWig 969.2 Mb (ftp)(http) BIGWIG
GSM923590_mm9_wgEncodePsuTfbsG1eer4e2Pol24h8ME0S129InputRepSignalRep3.bigWig 2.0 Gb (ftp)(http) BIGWIG
GSM923590_mm9_wgEncodePsuTfbsG1eer4e2Pol24h8ME0S129InputSig.bigWig 4.7 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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