NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM927 Query DataSets for GSM927
Status Public on Feb 12, 2002
Title SWI4 deletion unsynchronized cells in YPD (regrid)
Sample type RNA
 
Channel 1
Source name swi4 deletion (YK73)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name WT (YK74)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description SWI4 deletion unsynchronized cells in YPD
ScanAlyze Pro scanning software was used.
Keywords = Transcription
Keywords = Cell-cycle factors
Lot batch = f49swi4b
 
Submission date Feb 08, 2002
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL65
Series (1)
GSE19 SBF-MBF genomic distribution

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT
1 628 621 168 1004 76 944 928 657 54 711 .83 -100 -1.642 1.8 41 28 2.211 3.121 .452 .32 1.217 751 156 64 78 55 69
2 633 627 874 954 964 683 -64 619 .82 -100 1.592 12 11 1.28 585 156 64 78 72 86
3 581 581 79 961 65 876 896 635 46 681 .76 -100 -.779 1.638 26 16 1.215 1.716 .823 .583 1.261 573 156 64 78 89 103
4 596 590 14 914 25 887 889 630 18 647 .83 -100 .339 1.608 28 28 .56 .791 1.786 1.265 1.274 527 156 63 77 107 121
5 578 555 323 1305 483 826 822 582 342 924 .83 -100 .083 1.444 51 50 .669 .944 1.495 1.059 1.304 508 156 63 77 124 138
6 524 504 67 879 182 723 697 494 129 623 .74 -100 .944 1.581 23 32 .368 .52 2.716 1.924 1.116 558 156 63 77 141 155
7 472 450 7 628 22 637 606 429 16 445 .7 1.155 .655 30 20 .318 .449 3.143 2.226 .766 609 156 63 77 158 172
8 417 415 534 551 553 392 -13 378 .3 .973 40 60 .269 551 156 63 77 176 190
9 395 396 456 514 513 363 -40 323 .31 .962 10 20 .254 493 156 63 77 193 207
10 359 353 11 456 4 452 452 320 3 323 .1 -1.957 .509 15 90 2.75 3.882 .364 .258 .078 530 156 63 77 210 224
11 305 301 353 370 368 261 -11 250 .26 .75 10 70 .218 558 156 62 76 228 242
12 264 260 289 302 299 212 -7 205 .24 .636 10 50 .181 517 156 62 76 245 259
13 237 232 251 254 251 178 0 178 .05 .64 14 70 .048 549 156 62 76 262 276
14 218 213 6 234 11 225 223 158 8 166 .16 .377 .605 19 18 .545 .77 1.833 1.299 .11 569 156 62 76 279 293
15 207 203 8 224 16 210 208 147 11 159 .08 .502 .596 19 28 .5 .706 2 1.417 .048 558 156 62 76 297 311
16 195 195 2 197 11 186 186 132 8 140 .09 1.962 .572 15 19 .182 .257 5.5 3.896 .052 558 156 62 76 314 328
17 176 173 18 171 7 166 164 116 5 121 .11 -1.86 .472 26 15 2.571 3.63 .389 .275 .064 544 156 62 76 331 345
18 172 170 4 156 159 158 112 -1 110 .09 .645 16 12 .062 557 156 61 75 349 363
19 166 163 135 144 144 102 -6 96 .16 .63 12 60 .098 546 156 61 75 366 380
20 151 149 119 126 126 89 -5 84 .11 .513 14 60 .07 545 156 61 75 383 397

Total number of rows: 8832

Table truncated, full table size 1013 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap