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Sample GSM943 Query DataSets for GSM943
Status Public on Feb 12, 2002
Title SWI4 IP with anti-HA, alpha-factor treated cells, G-array
Sample type RNA
 
Channel 1
Source name amplified genomic DNA
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name SWI4 IP with anti-HA, plus alpha-factor
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description Same as i22swi4, on ORF + intergenic array
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = g100swi4
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL49
Series (1)
GSE19 SBF-MBF genomic distribution

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 50 44 1193 1096 1077 39 19 19 1051 1070 .88 0 -.183 .835 99 80 1.108 1.135 .903 .881 .84 634 120 57 70 101 114 -.183
2 48 41 33 62 44 36 18 18 43 61 .56 -100 .846 10 3 .75 .768 1.333 1.301 .648 740 156 54 69 116 131 .38
3 44 41 895 1083 1066 21 17 17 1041 1057 .91 0 .217 1.138 99 100 .84 .86 1.191 1.163 1.05 486 120 57 69 137 149 .217
4 45 42 426 615 598 22 17 17 584 600 .93 -100 .978 36 39 .712 .73 1.404 1.37 1.267 716 156 54 69 151 166 .454
5 41 39 446 479 462 19 17 17 451 468 .91 0 .016 1.105 99 100 .965 .989 1.036 1.011 .911 520 120 57 69 171 183 .016
6 42 42 60 67 50 21 17 17 49 65 .71 0 -.298 .855 80 69 1.2 1.229 .833 .813 .624 247 52 59 67 190 198 -.298
7 48 44 5 27 8 24 19 19 8 26 .5 .643 .5 6 8 .625 .64 1.6 1.562 .433 694 156 53 68 203 218 .643
8 48 45 1 23 3 24 20 20 3 22 .63 1.55 .571 10 4 .333 .342 3 2.928 .621 612 156 53 68 220 235 1.55
9 48 44 10 29 9 25 20 20 9 28 .42 -.187 .667 10 14 1.111 1.138 .9 .878 .201 610 156 53 68 238 253 -.187
10 49 44 11 34 15 23 19 19 15 33 .37 .413 .891 13 28 .733 .751 1.364 1.331 .374 598 156 53 68 255 270 .413
11 51 46 17 66 48 22 18 18 47 64 .3 1.463 1.029 12 32 .354 .363 2.824 2.756 .812 620 156 53 68 272 287 1.463
12 80 48 41 131 112 68 19 19 109 128 .9 1.415 .625 1 1 .366 .375 2.732 2.666 1.362 708 156 53 68 290 305 1.415
13 107 48 240 303 283 122 20 20 276 296 .93 0 .203 .905 15 7 .848 .869 1.179 1.151 1.225 323 52 57 66 310 319 .203
14 52 44 1090 1088 1070 25 18 18 1044 1062 .88 0 -.062 .986 100 100 1.019 1.044 .982 .958 .828 489 80 55 66 327 338 -.062
15 50 45 2119 2590 2573 22 17 17 2511 2528 .92 0 .245 1.209 100 100 .824 .844 1.214 1.185 1.138 567 120 55 68 343 356 .245
16 49 47 633 771 755 20 16 16 737 753 .84 0 .219 1.081 94 100 .838 .859 1.193 1.164 1.069 575 120 54 67 361 374 .219
17 59 51 2509 3570 3552 31 18 18 3467 3485 .92 0 .467 1.293 100 100 .706 .724 1.416 1.382 1.339 440 80 55 66 378 389 .467
18 59 49 3352 4649 4632 31 17 17 4521 4538 .97 0 .432 1.377 98 100 .724 .741 1.382 1.349 1.358 535 120 55 67 396 408 .432
19 51 48 2666 3860 3843 21 17 17 3751 3768 .96 0 .493 1.49 100 100 .694 .711 1.441 1.407 1.402 509 120 55 67 414 426 .493
20 64 49 2663 3370 3352 34 18 18 3272 3289 .94 0 .297 1.266 100 100 .794 .814 1.259 1.229 1.207 452 80 54 65 431 442 .297

Total number of rows: 16128

Table truncated, full table size 1942 Kbytes.




Supplementary data files not provided

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