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Sample GSM945 Query DataSets for GSM945
Status Public on Feb 12, 2002
Title SWI4 3xHA IP with anti-HA, alpha-factor treated cells, G-array
Sample type RNA
 
Channel 1
Source name amplified genomic DNA
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name SWI4 3xHA IP with anti-HA, plus alpha-factor
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description Same as i16swi4, on ORF + intergenic array
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = g118swi4
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL49
Series (1)
GSE19 SBF-MBF genomic distribution

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 32 29 794 630 614 20 16 17 675 692 .93 0 -.234 .739 89 87 1.293 1.176 .773 .85 .71 835 156 65 80 91 106 -.234
2 36 29 76 89 73 27 16 17 80 97 .76 0 .074 .872 33 26 1.041 .95 .961 1.053 .704 671 156 65 80 108 123 .074
3 32 29 678 664 649 19 15 16 713 729 .94 0 .073 .895 85 82 1.045 .951 .957 1.052 .928 652 156 65 80 126 141 .073
4 32 28 52 74 59 21 15 16 65 81 .8 0 .322 .933 35 30 .881 .8 1.135 1.25 .908 644 156 65 80 143 158 .322
5 31 27 363 339 324 22 15 16 356 372 .93 0 -.028 .886 80 74 1.12 1.02 .893 .981 .835 650 156 64 79 161 176 -.028
6 31 27 66 75 59 21 16 17 65 82 .73 0 -.022 .728 39 30 1.119 1.015 .894 .985 .794 700 156 64 79 178 193 -.022
7 32 29 9 38 22 25 16 17 24 41 .63 1.415 .536 5 5 .409 .375 2.444 2.667 .857 335 80 68 78 193 203 1.415
8 30 27 5 18 3 18 15 16 3 19 .15 -.737 .667 17 5 1.667 1.667 .6 .6 .223 426 80 68 78 211 221 -.737
9 31 28 17 2 18 15 16 2 18 .12 .575 0 0 .093 411 80 68 78 228 238
10 30 28 13 19 3 22 16 17 3 20 .48 -2.115 .6 10 1 4.333 4.333 .231 .231 .208 382 80 68 78 245 255 -2.115
11 28 27 3 19 4 17 15 16 4 20 .79 .415 .861 20 6 .75 .75 1.333 1.333 .596 388 80 67 77 260 270 .415
12 29 26 2 15 18 15 16 16 .28 .732 11 8 .156 379 80 67 77 277 287
13 34 27 88 119 102 22 17 18 112 130 .83 -100 .871 33 33 .863 .786 1.159 1.273 .965 755 156 64 79 291 306 .348
14 33 28 1414 1225 1208 21 17 18 1328 1346 .9 0 -.091 .865 100 100 1.171 1.065 .854 .939 .759 406 80 67 78 309 320 -.091
15 27 23 962 1061 1049 17 12 13 1152 1165 .94 0 .26 1.087 100 100 .917 .835 1.09 1.198 .993 434 80 68 78 326 336 .26
16 27 24 499 612 599 15 13 14 658 672 .92 0 .399 1.205 95 99 .833 .758 1.2 1.319 1.078 587 120 67 79 345 357 .399
17 38 28 1517 2312 2296 20 16 17 2523 2540 .94 0 .734 1.55 100 100 .661 .601 1.514 1.663 1.401 449 80 66 77 362 373 .734
18 48 33 2600 2860 2842 33 18 19 3123 3142 .95 0 .264 1.096 100 100 .915 .833 1.093 1.201 .98 464 80 66 77 379 390 .264
19 41 31 1745 2729 2712 29 17 18 2980 2998 .95 0 .772 1.548 96 99 .643 .586 1.554 1.708 1.473 507 120 66 78 396 408 .772
20 31 31 1530 1568 1552 18 16 17 1706 1723 .96 0 .157 1.012 98 100 .986 .897 1.014 1.115 .976 471 120 66 78 414 426 .157

Total number of rows: 16128

Table truncated, full table size 1906 Kbytes.




Supplementary data files not provided

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