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Sample GSM946 Query DataSets for GSM946
Status Public on Feb 12, 2002
Title SWI4 IP with anti-Swi4, alpha-factor treated cells (#30), G-array
Sample type RNA
 
Channel 1
Source name swi4 deletion
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name WT
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description Same as i26swi4, on ORF + intergenic array
ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = g103swi4
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL49
Series (1)
GSE19 SBF-MBF genomic distribution

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 26 24 992 1156 1134 27 22 23 1193 1216 .94 0 .266 1.162 95 97 .875 .832 1.143 1.203 1.046 893 156 77 92 95 110 .266
2 24 23 116 183 163 22 20 21 171 192 .71 0 .56 1.16 82 84 .712 .678 1.405 1.474 1.2 316 52 79 88 115 124 .56
3 25 22 867 980 961 25 19 20 1011 1031 .92 0 .222 1.077 98 100 .902 .858 1.108 1.166 1.041 505 120 79 91 131 143 .222
4 23 18 28 52 36 26 16 16 38 54 .72 0 .441 .974 34 21 .778 .737 1.286 1.357 1.019 666 156 76 91 146 161 .441
5 19 14 293 291 280 17 11 11 295 306 .9 0 .01 .932 85 80 1.046 .993 .956 1.007 .814 576 156 76 91 164 179 .01
6 16 12 21 28 20 14 8 8 21 29 .5 0 0 .783 42 38 1.05 1 .952 1 .517 522 156 76 91 181 196 0
7 14 9 9 17 12 12 5 5 12 17 .66 .415 .806 26 23 .75 .75 1.333 1.333 .721 543 156 75 90 198 213 .415
8 14 7 2 5 1 12 4 4 1 5 .73 -1 .571 7 3 2 2 .5 .5 .711 550 156 75 90 213 228 -1
9 11 6 3 8 3 3 3 .7 .5 3 0 .638 624 156 75 90 231 246
10 17 5 1 3 1 27 2 2 1 3 .05 0 .4 0 0 1 1 1 1 .036 701 156 75 90 248 263 0
11 12 6 3 11 3 3 3 .3 .5 0 0 .165 686 156 75 90 265 280
12 11 6 3 9 4 4 3 .57 .667 1 0 .42 706 156 75 90 283 298
13 7 4 107 104 102 4 2 2 107 109 .77 0 0 .961 91 95 1.049 1 .953 1 .725 308 80 81 91 306 316 0
14 8 5 626 780 778 6 2 2 819 821 .92 0 .388 1.228 97 100 .805 .764 1.243 1.308 1.137 398 120 79 91 320 332 .388
15 15 10 887 1045 1040 13 5 5 1095 1100 .96 0 .304 1.181 99 100 .853 .81 1.172 1.234 1.117 438 120 79 91 337 349 .304
16 82 19 592 591 574 83 17 17 605 622 .75 0 .031 .97 62 62 1.031 .979 .97 1.022 .836 433 80 79 90 355 366 .031
17 101 20 1605 1663 1645 103 18 18 1732 1750 .94 0 .11 1.024 98 100 .976 .927 1.025 1.079 .912 325 52 78 87 374 383 .11
18 19 14 1532 1826 1813 16 13 13 1909 1922 .96 0 .317 1.183 80 80 .845 .803 1.183 1.246 1.142 635 120 76 89 388 401 .317
19 23 22 1977 2393 2373 23 20 21 2497 2518 .96 0 .337 1.192 100 100 .833 .792 1.2 1.263 1.125 510 120 78 90 407 419 .337
20 30 26 1228 1472 1448 37 24 25 1524 1549 .95 0 .312 1.171 95 98 .848 .806 1.179 1.241 1.149 514 120 78 90 424 436 .312

Total number of rows: 16128

Table truncated, full table size 1917 Kbytes.




Supplementary data files not provided

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