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Sample GSM948 Query DataSets for GSM948
Status Public on Feb 12, 2002
Title MBP1 3xMYC IP with anti-MYC, unsynchronized cells (#A37)
Sample type RNA
 
Channel 1
Source name MBP1
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name MBP1 3xMYC
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i101mbp1
 
Submission date Feb 08, 2002
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL50
Series (1)
GSE19 SBF-MBF genomic distribution

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT
1 37 13 554 579 558 39 21 26 697 723 .87 0 .331 .753 63 61 .993 .795 1.007 1.258 .922 358 52 51 60 45 54
2 33 13 24 55 32 74 23 28 40 68 .51 -100 .737 .927 0 1 .75 .6 1.333 1.667 1.301 787 156 48 62 59 73
3 36 11 1361 881 859 75 22 27 1074 1101 .86 0 -.342 .669 100 96 1.584 1.267 .631 .789 .563 302 52 51 60 79 88
4 28 12 12 27 7 66 20 25 8 33 .16 -100 -.585 .981 1 0 1.714 1.5 .583 .667 .465 608 156 48 62 93 107
5 24 11 504 200 181 118 19 23 227 250 .05 0 -1.151 .283 67 1 2.785 2.22 .359 .45 .149 585 156 48 62 112 126
6 25 11 511 396 376 128 20 25 470 495 .11 0 -.121 .725 86 0 1.359 1.087 .736 .92 .505 508 120 51 63 130 142
7 54 10 592 411 390 59 21 26 487 513 .71 0 -.282 .656 65 57 1.518 1.216 .659 .823 .474 451 80 51 62 148 159
8 84 12 3393 7840 7808 105 32 40 9760 9800 .69 0 1.524 1.932 96 100 .435 .348 2.301 2.877 1.58 341 80 51 62 166 177
9 29 8 2 48 27 86 21 26 34 60 .6 4.087 5.417 0 0 .074 .059 13.5 17 .295 572 156 48 62 179 193
10 10 6 3 19 2 62 17 21 2 23 .71 -.585 2 0 0 1.5 1.5 .667 .667 7.289 530 156 48 62 197 211
11 9 6 27 38 24 18 14 17 30 47 .26 .152 1.667 3 8 1.125 .9 .889 1.111 .192 546 156 48 62 214 228
12 8 5 2 14 18 15 18 17 .19 2 0 0 .085 596 156 48 62 231 245
13 5 4 2 15 15 15 18 18 0 2 17 15 615 156 48 62 248 262
14 5 5 14 14 14 17 17 2.333 10 16 607 156 48 62 266 280
15 7 5 1 15 1 22 14 17 1 18 .07 0 1.708 0 0 1 1 1 1 .103 589 156 48 62 283 297
16 6 5 1 15 1 15 14 17 1 18 .09 0 2 8 15 1 1 1 1 .128 595 156 48 62 300 314
17 6 5 1 14 15 14 17 17 0 2 13 14 580 156 48 62 317 331
18 6 5 4 255 241 15 14 17 301 318 .72 6.234 2 11 17 .017 .013 60.25 75.25 71.573 586 156 48 62 334 348
19 6 5 15 1 15 14 17 1 18 0 1.5 13 15 586 156 48 62 352 366
20 6 5 1 15 1 18 14 17 1 18 .19 0 1.702 13 0 1 1 1 1 1.188 581 156 48 62 369 383

Total number of rows: 7680

Table truncated, full table size 834 Kbytes.




Supplementary data files not provided
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