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| Status |
Public on Jan 01, 2007 |
| Title |
#150562 Soybean embryo, RCAT-Angora & Harovinton, London 2004 time course |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Hvtn 30dap L04
|
| Organism |
Glycine max |
| Characteristics |
Harovinton, soybean cultivar with low seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
RCAT 30dap L04
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
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| |
| Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
|
| Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity
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| |
|
| Submission date |
Feb 02, 2006 |
| Last update date |
May 10, 2006 |
| Contact name |
Sangeeta Dhaubhadel |
| E-mail(s) |
dhaubhadels@agr.gc.ca
|
| Phone |
519-457-1470 x670
|
| Fax |
519-457-3997
|
| Organization name |
SCPFRC London
|
| Department |
Agriculture & Agrifood Canada
|
| Lab |
Plant Molecular Biology
|
| Street address |
1391 Sandford St
|
| City |
London |
| State/province |
ON |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL3015 |
| Series (1) |
| GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
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| Data table header descriptions |
| ID_REF |
rearranged for LRGC scanner |
| CH1-VOL |
Cy3 intensity |
| CH1-Bkgd |
Cy3 background |
| CH1-sVOL |
Cy3 background subtracted intensity |
| CH2-VOL |
Cy5 intensity |
| CH2-Bkgd |
Cy5 background |
| CH2-sVOL |
Cy5 background subtracted intensity |
| RATIO |
CH2-VOL divided by CH1-VOL |
| VALUE |
log2 ratio |
| Data table |
| ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
| Gm00024cDNA18kA |
90.5233 |
6.438 |
84.085 |
49.0168 |
8.312 |
40.705 |
0.54148269 |
-0.885012876 |
| Gm00120cDNA18kA |
96.1396 |
5.986 |
90.154 |
63.706 |
8.375 |
55.331 |
0.662640577 |
-0.593701545 |
| Gm00216cDNA18kA |
19.0632 |
6.209 |
12.854 |
15.0412 |
8.397 |
6.645 |
0.789017584 |
-0.341870643 |
| Gm00312cDNA18kA |
113.6111 |
6.546 |
107.065 |
90.6388 |
8.503 |
82.136 |
0.797798807 |
-0.325903129 |
| Gm00012cDNA18kA |
92.9208 |
6.219 |
86.702 |
50.2803 |
8.468 |
41.812 |
0.541109203 |
-0.886008317 |
| Gm00108cDNA18kA |
25.2398 |
6.063 |
19.177 |
17.0206 |
8.322 |
8.698 |
0.674355581 |
-0.568418584 |
| Gm00204cDNA18kA |
196.6326 |
5.968 |
190.665 |
191.2642 |
8.498 |
182.766 |
0.972698322 |
-0.039935666 |
| Gm00300cDNA18kA |
49.0679 |
6.337 |
42.731 |
40.4581 |
9.055 |
31.403 |
0.824532943 |
-0.278350959 |
| Gm00408cDNA18kA |
25.0504 |
6.384 |
18.666 |
20.7084 |
8.925 |
11.784 |
0.826669434 |
-0.27461755 |
| Gm00504cDNA18kA |
21.4284 |
5.963 |
15.465 |
15.8484 |
8.634 |
7.214 |
0.739597917 |
-0.435186934 |
| Gm00600cDNA18kA |
64.4772 |
5.761 |
58.716 |
32.1812 |
8.718 |
23.463 |
0.499109763 |
-1.002570971 |
| Gm00696cDNA18kA |
21.5042 |
5.929 |
15.575 |
14.9497 |
8.755 |
6.195 |
0.695199077 |
-0.524501927 |
| Gm00396cDNA18kA |
53.9056 |
6.075 |
47.831 |
38.6652 |
8.709 |
29.956 |
0.717276127 |
-0.47939948 |
| Gm00492cDNA18kA |
34.8421 |
6.104 |
28.738 |
24.128 |
8.674 |
15.454 |
0.692495573 |
-0.530123247 |
| Gm00588cDNA18kA |
32.4119 |
6.393 |
26.019 |
19.136 |
8.94 |
10.196 |
0.590400439 |
-0.7602343 |
| Gm00684cDNA18kA |
67.7405 |
6.331 |
61.41 |
35.2695 |
8.989 |
26.28 |
0.520656033 |
-0.941597512 |
| Gm00792cDNA18kA |
22.4942 |
6.598 |
15.896 |
16.7968 |
9.103 |
7.694 |
0.746716931 |
-0.421366651 |
| Gm00888cDNA18kA |
16.8669 |
7.212 |
9.655 |
14.7955 |
9.306 |
5.49 |
0.877191422 |
-0.18903639 |
| Gm00984cDNA18kA |
23.2106 |
6.94 |
16.271 |
16.6692 |
9.223 |
7.446 |
0.71817187 |
-0.47759895 |
| Gm01080cDNA18kA |
124.1782 |
6.312 |
117.866 |
63.666 |
9.32 |
54.346 |
0.512698686 |
-0.963816894 |
Total number of rows: 19200
Table truncated, full table size 1514 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM94936.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSM94936_Cy3.tif.gz |
76.7 Mb |
(ftp)(http) |
TIFF |
| GSM94936_Cy5.tif.gz |
76.6 Mb |
(ftp)(http) |
TIFF |
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