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| Status |
Public on Jan 01, 2007 |
| Title |
#150558 Soybean embryo, RCAT-Angora & Harovinton, London 2004 time course |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Hvtn 40dap L04
|
| Organism |
Glycine max |
| Characteristics |
Harovinton, soybean cultivar with low seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
RCAT 40dap L04
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
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| Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity
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| |
|
| Submission date |
Feb 02, 2006 |
| Last update date |
May 10, 2006 |
| Contact name |
Sangeeta Dhaubhadel |
| E-mail(s) |
dhaubhadels@agr.gc.ca
|
| Phone |
519-457-1470 x670
|
| Fax |
519-457-3997
|
| Organization name |
SCPFRC London
|
| Department |
Agriculture & Agrifood Canada
|
| Lab |
Plant Molecular Biology
|
| Street address |
1391 Sandford St
|
| City |
London |
| State/province |
ON |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL3015 |
| Series (1) |
| GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
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| Data table header descriptions |
| ID_REF |
rearranged for LRGC scanner |
| CH1-VOL |
Cy3 intensity |
| CH1-Bkgd |
Cy3 background |
| CH1-sVOL |
Cy3 background subtracted intensity |
| CH2-VOL |
Cy5 intensity |
| CH2-Bkgd |
Cy5 background |
| CH2-sVOL |
Cy5 background subtracted intensity |
| RATIO |
CH2-VOL divided by CH1-VOL |
| VALUE |
log2 ratio |
| Data table |
| ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
| Gm00024cDNA18kA |
92.695 |
5.867 |
86.828 |
90.2928 |
9.833 |
80.46 |
0.974084902 |
-0.037880571 |
| Gm00120cDNA18kA |
76.1937 |
5.634 |
70.559 |
86.2095 |
9.99 |
76.22 |
1.131451813 |
0.178175143 |
| Gm00216cDNA18kA |
12.5455 |
5.488 |
7.057 |
16.4168 |
9.95 |
6.467 |
1.308580766 |
0.388002971 |
| Gm00312cDNA18kA |
77.398 |
5.634 |
71.764 |
89.5796 |
10.081 |
79.499 |
1.15738908 |
0.210873937 |
| Gm00012cDNA18kA |
81.0552 |
6.018 |
75.037 |
101.0484 |
10.384 |
90.664 |
1.246661534 |
0.31806983 |
| Gm00108cDNA18kA |
24.7436 |
9.873 |
14.87 |
22.5294 |
13.102 |
9.428 |
0.910514234 |
-0.135246524 |
| Gm00204cDNA18kA |
97.2891 |
9.662 |
87.627 |
108.7461 |
12.724 |
96.022 |
1.117762421 |
0.160613578 |
| Gm00300cDNA18kA |
38.1959 |
5.91 |
32.286 |
46.7729 |
9.78 |
36.993 |
1.224552897 |
0.292255095 |
| Gm00408cDNA18kA |
16.4188 |
5.79 |
10.628 |
18.5058 |
9.855 |
8.651 |
1.127110386 |
0.172628815 |
| Gm00504cDNA18kA |
17.5015 |
5.861 |
11.641 |
19.8766 |
10.161 |
9.716 |
1.135708368 |
0.183592421 |
| Gm00600cDNA18kA |
69.6607 |
5.934 |
63.726 |
81.0423 |
10.217 |
70.826 |
1.163386242 |
0.218330149 |
| Gm00696cDNA18kA |
19.5042 |
6.472 |
13.032 |
20.8263 |
10.357 |
10.47 |
1.0677854 |
0.094621728 |
| Gm00396cDNA18kA |
24.2293 |
6.781 |
17.448 |
26.4099 |
10.503 |
15.906 |
1.089998473 |
0.124326114 |
| Gm00492cDNA18kA |
16.1495 |
6.35 |
9.799 |
18.1947 |
10.215 |
7.98 |
1.126641692 |
0.172028765 |
| Gm00588cDNA18kA |
21.788 |
5.968 |
15.82 |
27.8259 |
10.219 |
17.607 |
1.277120433 |
0.352894579 |
| Gm00684cDNA18kA |
10.3581 |
5.771 |
4.587 |
13.7858 |
10.367 |
3.418 |
1.330919763 |
0.412423599 |
| Gm00792cDNA18kA |
20.0377 |
5.865 |
14.173 |
24.2015 |
10.476 |
13.725 |
1.2077983 |
0.272379548 |
| Gm00888cDNA18kA |
10.4862 |
5.937 |
4.549 |
13.7915 |
10.86 |
2.932 |
1.315204745 |
0.395287409 |
| Gm00984cDNA18kA |
19.3419 |
5.766 |
13.576 |
21.0852 |
10.995 |
10.09 |
1.090130752 |
0.124501185 |
| Gm01080cDNA18kA |
48.1795 |
5.462 |
42.718 |
40.246 |
10.811 |
29.435 |
0.83533453 |
-0.259574019 |
Total number of rows: 19200
Table truncated, full table size 1497 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM94938.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
| GSM94938_Cy3.tif.gz |
75.3 Mb |
(ftp)(http) |
TIFF |
| GSM94938_Cy5.tif.gz |
76.1 Mb |
(ftp)(http) |
TIFF |
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