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Sample GSM94940 Query DataSets for GSM94940
Status Public on Jan 01, 2007
Title #150560 Soybean embryo, RCAT-Angora & Harovinton, London 2004 time course
Sample type RNA
 
Channel 1
Source name Hvtn 50dap L04
Organism Glycine max
Characteristics Harovinton, soybean cultivar with low seed isoflavonoid content
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name RCAT 50dap L04
Organism Glycine max
Characteristics RCAT-Angora, soybean cultivar with high seed isoflavonoid content
Extracted molecule total RNA
Label Cy5
 
 
Description Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
Data processing Arrayvision LRGC scanner layout, background subtracted intensity
 
Submission date Feb 02, 2006
Last update date May 10, 2006
Contact name Sangeeta Dhaubhadel
E-mail(s) dhaubhadels@agr.gc.ca
Phone 519-457-1470 x670
Fax 519-457-3997
Organization name SCPFRC London
Department Agriculture & Agrifood Canada
Lab Plant Molecular Biology
Street address 1391 Sandford St
City London
State/province ON
ZIP/Postal code N5V 4T3
Country Canada
 
Platform ID GPL3015
Series (1)
GSE4194 Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development

Data table header descriptions
ID_REF rearranged for LRGC scanner
CH1-VOL Cy3 intensity
CH1-Bkgd Cy3 background
CH1-sVOL Cy3 background subtracted intensity
CH2-VOL Cy5 intensity
CH2-Bkgd Cy5 background
CH2-sVOL Cy5 background subtracted intensity
RATIO CH2-VOL divided by CH1-VOL
VALUE log2 ratio

Data table
ID_REF CH1-VOL CH1-Bkgd CH1-sVOL CH2-VOL CH2-Bkgd CH2-sVOL RATIO VALUE
Gm00024cDNA18kA 70.1491 14.586 55.563 60.5932 12.165 48.428 0.863777297 -0.211268696
Gm00120cDNA18kA 68.3413 13.339 55.002 87.442 12.065 75.377 1.279489855 0.355568708
Gm00216cDNA18kA 19.8796 12.173 7.706 14.6352 11.867 2.768 0.736191875 -0.441846267
Gm00312cDNA18kA 69.7724 13.024 56.748 82.3605 12.325 70.035 1.180416612 0.239296129
Gm00012cDNA18kA 52.6007 13.422 39.179 40.3617 12.57 27.792 0.767322488 -0.382095058
Gm00108cDNA18kA 25.0988 13.192 11.907 18.6307 12.555 6.075 0.742294452 -0.429936508
Gm00204cDNA18kA 94.8574 12.079 82.779 166.6799 12.522 154.158 1.757162857 0.813247909
Gm00300cDNA18kA 25.9363 11.6 14.336 23.7411 12.508 11.233 0.915361867 -0.127585902
Gm00408cDNA18kA 24.3399 12.302 12.038 21.8484 12.439 9.409 0.897637213 -0.155795608
Gm00504cDNA18kA 17.7807 12.668 5.112 13.5986 12.246 1.352 0.764795537 -0.386853991
Gm00600cDNA18kA 26.9646 12.998 13.967 26.2581 12.103 14.155 0.973798981 -0.038304104
Gm00696cDNA18kA 18.4694 12.976 5.493 13.4608 12.316 1.145 0.728816312 -0.456372845
Gm00396cDNA18kA 33.4385 12.471 20.968 34.3264 12.764 21.563 1.026553225 0.03780843
Gm00492cDNA18kA 23.8781 12.977 10.901 19.8369 12.632 7.205 0.830757054 -0.267501458
Gm00588cDNA18kA 17.8996 15.009 2.891 14.3967 12.78 1.617 0.804302889 -0.314189192
Gm00684cDNA18kA 25.1632 15.692 9.471 21.5359 13.424 8.112 0.855849018 -0.224571785
Gm00792cDNA18kA 21.3221 14.33 6.992 19.1822 13.177 6.005 0.899639341 -0.152581343
Gm00888cDNA18kA 20.2366 13.726 6.511 16.3505 12.742 3.609 0.807966753 -0.307632166
Gm00984cDNA18kA 23.4277 13.298 10.13 16.231 12.741 3.49 0.692812355 -0.529463438
Gm01080cDNA18kA 163.04 12.99 150.05 119.0642 12.568 106.496 0.730276006 -0.453486265

Total number of rows: 19200

Table truncated, full table size 1540 Kbytes.




Supplementary file Size Download File type/resource
GSM94940.txt.gz 1.1 Mb (ftp)(http) TXT
GSM94940_Cy3.tif.gz 79.4 Mb (ftp)(http) TIFF
GSM94940_Cy5.tif.gz 78.0 Mb (ftp)(http) TIFF

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