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Status |
Public on Jan 01, 2007 |
Title |
#150560 Soybean embryo, RCAT-Angora & Harovinton, London 2004 time course |
Sample type |
RNA |
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Channel 1 |
Source name |
Hvtn 50dap L04
|
Organism |
Glycine max |
Characteristics |
Harovinton, soybean cultivar with low seed isoflavonoid content
|
Extracted molecule |
total RNA |
Label |
Cy3
|
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Channel 2 |
Source name |
RCAT 50dap L04
|
Organism |
Glycine max |
Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
Extracted molecule |
total RNA |
Label |
Cy5
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Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
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Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity
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Submission date |
Feb 02, 2006 |
Last update date |
May 10, 2006 |
Contact name |
Sangeeta Dhaubhadel |
E-mail(s) |
dhaubhadels@agr.gc.ca
|
Phone |
519-457-1470 x670
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Fax |
519-457-3997
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Organization name |
SCPFRC London
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Department |
Agriculture & Agrifood Canada
|
Lab |
Plant Molecular Biology
|
Street address |
1391 Sandford St
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City |
London |
State/province |
ON |
ZIP/Postal code |
N5V 4T3 |
Country |
Canada |
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Platform ID |
GPL3015 |
Series (1) |
GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
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Data table header descriptions |
ID_REF |
rearranged for LRGC scanner |
CH1-VOL |
Cy3 intensity |
CH1-Bkgd |
Cy3 background |
CH1-sVOL |
Cy3 background subtracted intensity |
CH2-VOL |
Cy5 intensity |
CH2-Bkgd |
Cy5 background |
CH2-sVOL |
Cy5 background subtracted intensity |
RATIO |
CH2-VOL divided by CH1-VOL |
VALUE |
log2 ratio |
Data table |
ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
Gm00024cDNA18kA |
70.1491 |
14.586 |
55.563 |
60.5932 |
12.165 |
48.428 |
0.863777297 |
-0.211268696 |
Gm00120cDNA18kA |
68.3413 |
13.339 |
55.002 |
87.442 |
12.065 |
75.377 |
1.279489855 |
0.355568708 |
Gm00216cDNA18kA |
19.8796 |
12.173 |
7.706 |
14.6352 |
11.867 |
2.768 |
0.736191875 |
-0.441846267 |
Gm00312cDNA18kA |
69.7724 |
13.024 |
56.748 |
82.3605 |
12.325 |
70.035 |
1.180416612 |
0.239296129 |
Gm00012cDNA18kA |
52.6007 |
13.422 |
39.179 |
40.3617 |
12.57 |
27.792 |
0.767322488 |
-0.382095058 |
Gm00108cDNA18kA |
25.0988 |
13.192 |
11.907 |
18.6307 |
12.555 |
6.075 |
0.742294452 |
-0.429936508 |
Gm00204cDNA18kA |
94.8574 |
12.079 |
82.779 |
166.6799 |
12.522 |
154.158 |
1.757162857 |
0.813247909 |
Gm00300cDNA18kA |
25.9363 |
11.6 |
14.336 |
23.7411 |
12.508 |
11.233 |
0.915361867 |
-0.127585902 |
Gm00408cDNA18kA |
24.3399 |
12.302 |
12.038 |
21.8484 |
12.439 |
9.409 |
0.897637213 |
-0.155795608 |
Gm00504cDNA18kA |
17.7807 |
12.668 |
5.112 |
13.5986 |
12.246 |
1.352 |
0.764795537 |
-0.386853991 |
Gm00600cDNA18kA |
26.9646 |
12.998 |
13.967 |
26.2581 |
12.103 |
14.155 |
0.973798981 |
-0.038304104 |
Gm00696cDNA18kA |
18.4694 |
12.976 |
5.493 |
13.4608 |
12.316 |
1.145 |
0.728816312 |
-0.456372845 |
Gm00396cDNA18kA |
33.4385 |
12.471 |
20.968 |
34.3264 |
12.764 |
21.563 |
1.026553225 |
0.03780843 |
Gm00492cDNA18kA |
23.8781 |
12.977 |
10.901 |
19.8369 |
12.632 |
7.205 |
0.830757054 |
-0.267501458 |
Gm00588cDNA18kA |
17.8996 |
15.009 |
2.891 |
14.3967 |
12.78 |
1.617 |
0.804302889 |
-0.314189192 |
Gm00684cDNA18kA |
25.1632 |
15.692 |
9.471 |
21.5359 |
13.424 |
8.112 |
0.855849018 |
-0.224571785 |
Gm00792cDNA18kA |
21.3221 |
14.33 |
6.992 |
19.1822 |
13.177 |
6.005 |
0.899639341 |
-0.152581343 |
Gm00888cDNA18kA |
20.2366 |
13.726 |
6.511 |
16.3505 |
12.742 |
3.609 |
0.807966753 |
-0.307632166 |
Gm00984cDNA18kA |
23.4277 |
13.298 |
10.13 |
16.231 |
12.741 |
3.49 |
0.692812355 |
-0.529463438 |
Gm01080cDNA18kA |
163.04 |
12.99 |
150.05 |
119.0642 |
12.568 |
106.496 |
0.730276006 |
-0.453486265 |
Total number of rows: 19200
Table truncated, full table size 1540 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM94940.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
GSM94940_Cy3.tif.gz |
79.4 Mb |
(ftp)(http) |
TIFF |
GSM94940_Cy5.tif.gz |
78.0 Mb |
(ftp)(http) |
TIFF |
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