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| Status |
Public on Jan 01, 2007 |
| Title |
#150555 Soybean embryo, RCAT-Angora & Harovinton, London 2004 time course |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RCAT 70dap L04
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
Hvtn 70dap L04
|
| Organism |
Glycine max |
| Characteristics |
Harovinton, soybean cultivar with low seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
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| |
| Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
|
| Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity
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| |
|
| Submission date |
Feb 02, 2006 |
| Last update date |
May 10, 2006 |
| Contact name |
Sangeeta Dhaubhadel |
| E-mail(s) |
dhaubhadels@agr.gc.ca
|
| Phone |
519-457-1470 x670
|
| Fax |
519-457-3997
|
| Organization name |
SCPFRC London
|
| Department |
Agriculture & Agrifood Canada
|
| Lab |
Plant Molecular Biology
|
| Street address |
1391 Sandford St
|
| City |
London |
| State/province |
ON |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
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| Platform ID |
GPL3015 |
| Series (1) |
| GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
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| Data table header descriptions |
| ID_REF |
rearranged for LRGC scanner |
| CH1-VOL |
Cy3 intensity |
| CH1-Bkgd |
Cy3 background |
| CH1-sVOL |
Cy3 background subtracted intensity |
| CH2-VOL |
Cy5 intensity |
| CH2-Bkgd |
Cy5 background |
| CH2-sVOL |
Cy5 background subtracted intensity |
| RATIO |
CH2-VOL divided by CH1-VOL |
| VALUE |
log2 ratio |
| Data table |
| ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
| Gm00024cDNA18kA |
52.5972 |
27.793 |
24.804 |
38.4454 |
20.224 |
18.222 |
0.73094005 |
-0.45217501 |
| Gm00120cDNA18kA |
41.918 |
29.98 |
11.938 |
26.4498 |
20.303 |
6.147 |
0.630989074 |
-0.664313071 |
| Gm00216cDNA18kA |
29.8447 |
30.882 |
0 |
20.3663 |
20.784 |
0 |
0.682409272 |
-0.551290846 |
| Gm00312cDNA18kA |
51.3704 |
29.806 |
21.564 |
31.5634 |
20.988 |
10.576 |
0.614427764 |
-0.702684687 |
| Gm00012cDNA18kA |
42.4028 |
28.94 |
13.463 |
31.9221 |
20.87 |
11.052 |
0.752830002 |
-0.409603971 |
| Gm00108cDNA18kA |
34.6153 |
28.216 |
6.399 |
22.1466 |
20.451 |
1.696 |
0.639792231 |
-0.644324622 |
| Gm00204cDNA18kA |
41.3729 |
28.267 |
13.106 |
25.2086 |
20.448 |
4.76 |
0.609302224 |
-0.714770088 |
| Gm00300cDNA18kA |
34.3202 |
28.546 |
5.774 |
21.9142 |
20.801 |
1.114 |
0.63852192 |
-0.647191947 |
| Gm00408cDNA18kA |
43.8015 |
27.403 |
16.399 |
34.1797 |
20.596 |
13.583 |
0.780331724 |
-0.357840542 |
| Gm00504cDNA18kA |
30.6874 |
26.706 |
3.981 |
20.7507 |
20.503 |
0.248 |
0.676196094 |
-0.564486413 |
| Gm00600cDNA18kA |
44.2132 |
27.903 |
16.31 |
31.5439 |
20.425 |
11.118 |
0.713449829 |
-0.487116113 |
| Gm00696cDNA18kA |
29.0268 |
28.485 |
0.542 |
20.4057 |
21.37 |
0 |
0.702995163 |
-0.508413332 |
| Gm00396cDNA18kA |
29.2636 |
29.137 |
0.127 |
22.6686 |
22.704 |
0 |
0.7746347 |
-0.368411967 |
| Gm00492cDNA18kA |
43.3546 |
28.973 |
14.381 |
27.2088 |
21.885 |
5.323 |
0.627587384 |
-0.672111744 |
| Gm00588cDNA18kA |
29.5463 |
27.999 |
1.548 |
20.2633 |
20.675 |
0 |
0.685815144 |
-0.544108332 |
| Gm00684cDNA18kA |
30.0159 |
27.862 |
2.154 |
21.5624 |
21.205 |
0.357 |
0.718365933 |
-0.477209161 |
| Gm00792cDNA18kA |
29.6145 |
29.588 |
0.026 |
20.7121 |
21.562 |
0 |
0.699390501 |
-0.515829893 |
| Gm00888cDNA18kA |
31.7055 |
30.982 |
0.723 |
20.6436 |
21.486 |
0 |
0.651104698 |
-0.619038547 |
| Gm00984cDNA18kA |
31.9663 |
29.442 |
2.525 |
20.9513 |
21.361 |
0 |
0.655418362 |
-0.609512002 |
| Gm01080cDNA18kA |
152.8851 |
27.846 |
125.039 |
74.6431 |
20.71 |
53.933 |
0.48823005 |
-1.034367001 |
Total number of rows: 19200
Table truncated, full table size 1520 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM94943.txt.gz |
1.0 Mb |
(ftp)(http) |
TXT |
| GSM94943_Cy3.tif.gz |
81.6 Mb |
(ftp)(http) |
TIFF |
| GSM94943_Cy5.tif.gz |
79.9 Mb |
(ftp)(http) |
TIFF |
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