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| Status |
Public on Jan 01, 2007 |
| Title |
#150807 Soybean embryo, RCAT-Angora & Harovinton, London 2003 time course |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Hvtn 30dap L03
|
| Organism |
Glycine max |
| Characteristics |
Harovinton, soybean cultivar with low seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
RCAT 30dap L03
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
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| |
| Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
|
| Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity"
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| |
|
| Submission date |
Feb 02, 2006 |
| Last update date |
May 10, 2006 |
| Contact name |
Sangeeta Dhaubhadel |
| E-mail(s) |
dhaubhadels@agr.gc.ca
|
| Phone |
519-457-1470 x670
|
| Fax |
519-457-3997
|
| Organization name |
SCPFRC London
|
| Department |
Agriculture & Agrifood Canada
|
| Lab |
Plant Molecular Biology
|
| Street address |
1391 Sandford St
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| City |
London |
| State/province |
ON |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL3015 |
| Series (1) |
| GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
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| Data table header descriptions |
| ID_REF |
rearranged for LRGC scanner |
| CH1-VOL |
Cy3 intensity |
| CH1-Bkgd |
Cy3 background |
| CH1-sVOL |
Cy3 background subtracted intensity |
| CH2-VOL |
Cy5 intensity |
| CH2-Bkgd |
Cy5 background |
| CH2-sVOL |
Cy5 background subtracted intensity |
| RATIO |
CH2-VOL divided by CH1-VOL |
| VALUE |
log2 ratio |
| Data table |
| ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
| Gm00024cDNA18kA |
111.7703 |
4.204 |
107.566 |
42.1211 |
14.768 |
27.353 |
0.376854137 |
-1.407921863 |
| Gm00120cDNA18kA |
26.9393 |
4.141 |
22.798 |
21.3259 |
14.785 |
6.541 |
0.791627845 |
-0.337105736 |
| Gm00216cDNA18kA |
10.6772 |
4.064 |
6.613 |
16.976 |
14.265 |
2.711 |
1.589929944 |
0.668963199 |
| Gm00312cDNA18kA |
61.6971 |
4.092 |
57.605 |
32.4658 |
13.899 |
18.567 |
0.526212739 |
-0.926281919 |
| Gm00012cDNA18kA |
85.6996 |
4.102 |
81.598 |
38.2695 |
13.721 |
24.549 |
0.44655401 |
-1.163093419 |
| Gm00108cDNA18kA |
16.8314 |
4.334 |
12.498 |
15.3253 |
13.094 |
2.232 |
0.910518436 |
-0.135239866 |
| Gm00204cDNA18kA |
151.2418 |
4.514 |
146.727 |
61.141 |
12.62 |
48.521 |
0.404259933 |
-1.306644871 |
| Gm00300cDNA18kA |
33.6356 |
4.524 |
29.111 |
27.0666 |
13.07 |
13.997 |
0.804700972 |
-0.31347532 |
| Gm00408cDNA18kA |
19.3306 |
4.847 |
14.484 |
20.9351 |
13.649 |
7.286 |
1.083003114 |
0.115037391 |
| Gm00504cDNA18kA |
11.5751 |
4.939 |
6.636 |
16.7869 |
14.76 |
2.027 |
1.450259609 |
0.536311178 |
| Gm00600cDNA18kA |
54.1894 |
4.736 |
49.454 |
31.3316 |
15.51 |
15.822 |
0.578186878 |
-0.790392228 |
| Gm00696cDNA18kA |
8.765 |
4.3 |
4.465 |
15.3193 |
14.938 |
0.381 |
1.747780947 |
0.80552438 |
| Gm00396cDNA18kA |
35.5597 |
4.064 |
31.496 |
26.3509 |
14.273 |
12.078 |
0.741032686 |
-0.432390916 |
| Gm00492cDNA18kA |
19.4727 |
3.95 |
15.523 |
22.8746 |
14.413 |
8.462 |
1.174700992 |
0.23229358 |
| Gm00588cDNA18kA |
15.1919 |
3.813 |
11.379 |
18.0534 |
14.683 |
3.37 |
1.188356953 |
0.248968252 |
| Gm00684cDNA18kA |
33.6437 |
3.853 |
29.791 |
26.9644 |
14.708 |
12.256 |
0.801469517 |
-0.319280444 |
| Gm00792cDNA18kA |
17.1523 |
4.167 |
12.986 |
18.1117 |
14.893 |
3.218 |
1.05593419 |
0.078519922 |
| Gm00888cDNA18kA |
11.976 |
4.7 |
7.276 |
17.814 |
14.77 |
3.044 |
1.48747495 |
0.572865373 |
| Gm00984cDNA18kA |
11.5709 |
4.499 |
7.072 |
16.437 |
13.984 |
2.453 |
1.420546371 |
0.506445926 |
| Gm01080cDNA18kA |
194.338 |
4.399 |
189.939 |
55.7597 |
13.528 |
42.232 |
0.28692124 |
-1.801273322 |
Total number of rows: 19200
Table truncated, full table size 1501 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM94948.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
| GSM94948_Cy3.tif.gz |
74.4 Mb |
(ftp)(http) |
TIFF |
| GSM94948_Cy5.tif.gz |
77.8 Mb |
(ftp)(http) |
TIFF |
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