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Status |
Public on Jan 01, 2007 |
Title |
#150809 Soybean embryo, RCAT-Angora & Harovinton, London 2003 time course |
Sample type |
RNA |
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Channel 1 |
Source name |
Hvtn 40dap L03
|
Organism |
Glycine max |
Characteristics |
Harovinton, soybean cultivar with low seed isoflavonoid content
|
Extracted molecule |
total RNA |
Label |
Cy3
|
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Channel 2 |
Source name |
RCAT 40dap L03
|
Organism |
Glycine max |
Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
Extracted molecule |
total RNA |
Label |
Cy5
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Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
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Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity"
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Submission date |
Feb 02, 2006 |
Last update date |
May 10, 2006 |
Contact name |
Sangeeta Dhaubhadel |
E-mail(s) |
dhaubhadels@agr.gc.ca
|
Phone |
519-457-1470 x670
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Fax |
519-457-3997
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Organization name |
SCPFRC London
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Department |
Agriculture & Agrifood Canada
|
Lab |
Plant Molecular Biology
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Street address |
1391 Sandford St
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City |
London |
State/province |
ON |
ZIP/Postal code |
N5V 4T3 |
Country |
Canada |
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Platform ID |
GPL3015 |
Series (1) |
GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
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Data table header descriptions |
ID_REF |
rearranged for LRGC scanner |
CH1-VOL |
Cy3 intensity |
CH1-Bkgd |
Cy3 background |
CH1-sVOL |
Cy3 background subtracted intensity |
CH2-VOL |
Cy5 intensity |
CH2-Bkgd |
Cy5 background |
CH2-sVOL |
Cy5 background subtracted intensity |
RATIO |
CH2-VOL divided by CH1-VOL |
VALUE |
log2 ratio |
Data table |
ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
Gm00024cDNA18kA |
88.5058 |
5.876 |
82.63 |
47.0872 |
11.955 |
35.133 |
0.53202389 |
-0.910437065 |
Gm00120cDNA18kA |
25.5713 |
5.448 |
20.123 |
19.7222 |
11.728 |
7.994 |
0.771263096 |
-0.374705014 |
Gm00216cDNA18kA |
10.0687 |
5.394 |
4.674 |
14.2428 |
11.959 |
2.284 |
1.414561959 |
0.50035537 |
Gm00312cDNA18kA |
61.6598 |
5.517 |
56.143 |
39.1113 |
11.878 |
27.233 |
0.634307928 |
-0.65674472 |
Gm00012cDNA18kA |
118.4088 |
7.884 |
110.524 |
67.71 |
12.54 |
55.17 |
0.571832499 |
-0.80633548 |
Gm00108cDNA18kA |
23.6192 |
8.071 |
15.548 |
18.6187 |
12.725 |
5.894 |
0.788286648 |
-0.343207756 |
Gm00204cDNA18kA |
108.3664 |
6.101 |
102.266 |
47.4655 |
12.143 |
35.322 |
0.438009383 |
-1.190966319 |
Gm00300cDNA18kA |
46.0109 |
6.406 |
39.605 |
35.2845 |
12.246 |
23.038 |
0.766872632 |
-0.38294111 |
Gm00408cDNA18kA |
26.0248 |
6.583 |
19.442 |
19.401 |
11.819 |
7.582 |
0.745481233 |
-0.42375606 |
Gm00504cDNA18kA |
20.7589 |
6.342 |
14.417 |
16.7479 |
11.714 |
5.034 |
0.80678167 |
-0.309749789 |
Gm00600cDNA18kA |
87.5743 |
6.211 |
81.363 |
45.8664 |
11.901 |
33.965 |
0.523742696 |
-0.933069875 |
Gm00696cDNA18kA |
14.8402 |
6.116 |
8.724 |
16.2246 |
12.275 |
3.95 |
1.093287152 |
0.128672375 |
Gm00396cDNA18kA |
36.0511 |
5.787 |
30.264 |
28.1416 |
12.403 |
15.739 |
0.780603088 |
-0.357338924 |
Gm00492cDNA18kA |
12.761 |
5.392 |
7.369 |
15.6497 |
12.317 |
3.332 |
1.226369407 |
0.294393613 |
Gm00588cDNA18kA |
22.8875 |
5.046 |
17.841 |
24.8848 |
12.235 |
12.65 |
1.087265975 |
0.120704906 |
Gm00684cDNA18kA |
65.8217 |
5.047 |
60.774 |
50.7244 |
12.245 |
38.48 |
0.770633393 |
-0.375883393 |
Gm00792cDNA18kA |
17.648 |
5.134 |
12.514 |
17.4883 |
12.238 |
5.25 |
0.990950816 |
-0.013114641 |
Gm00888cDNA18kA |
11.1319 |
5.544 |
5.588 |
13.8359 |
12.076 |
1.76 |
1.242905524 |
0.313716638 |
Gm00984cDNA18kA |
13.0209 |
7.481 |
5.539 |
14.3666 |
12.459 |
1.907 |
1.103349231 |
0.141889503 |
Gm01080cDNA18kA |
188.2503 |
7.735 |
180.515 |
73.4068 |
12.529 |
60.878 |
0.389942539 |
-1.358666546 |
Total number of rows: 19200
Table truncated, full table size 1522 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM94950.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
GSM94950_Cy3.tif.gz |
76.8 Mb |
(ftp)(http) |
TIFF |
GSM94950_Cy5.tif.gz |
76.8 Mb |
(ftp)(http) |
TIFF |
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