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Sample GSM94950 Query DataSets for GSM94950
Status Public on Jan 01, 2007
Title #150809 Soybean embryo, RCAT-Angora & Harovinton, London 2003 time course
Sample type RNA
 
Channel 1
Source name Hvtn 40dap L03
Organism Glycine max
Characteristics Harovinton, soybean cultivar with low seed isoflavonoid content
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name RCAT 40dap L03
Organism Glycine max
Characteristics RCAT-Angora, soybean cultivar with high seed isoflavonoid content
Extracted molecule total RNA
Label Cy5
 
 
Description Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
Data processing Arrayvision LRGC scanner layout, background subtracted intensity"
 
Submission date Feb 02, 2006
Last update date May 10, 2006
Contact name Sangeeta Dhaubhadel
E-mail(s) dhaubhadels@agr.gc.ca
Phone 519-457-1470 x670
Fax 519-457-3997
Organization name SCPFRC London
Department Agriculture & Agrifood Canada
Lab Plant Molecular Biology
Street address 1391 Sandford St
City London
State/province ON
ZIP/Postal code N5V 4T3
Country Canada
 
Platform ID GPL3015
Series (1)
GSE4194 Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development

Data table header descriptions
ID_REF rearranged for LRGC scanner
CH1-VOL Cy3 intensity
CH1-Bkgd Cy3 background
CH1-sVOL Cy3 background subtracted intensity
CH2-VOL Cy5 intensity
CH2-Bkgd Cy5 background
CH2-sVOL Cy5 background subtracted intensity
RATIO CH2-VOL divided by CH1-VOL
VALUE log2 ratio

Data table
ID_REF CH1-VOL CH1-Bkgd CH1-sVOL CH2-VOL CH2-Bkgd CH2-sVOL RATIO VALUE
Gm00024cDNA18kA 88.5058 5.876 82.63 47.0872 11.955 35.133 0.53202389 -0.910437065
Gm00120cDNA18kA 25.5713 5.448 20.123 19.7222 11.728 7.994 0.771263096 -0.374705014
Gm00216cDNA18kA 10.0687 5.394 4.674 14.2428 11.959 2.284 1.414561959 0.50035537
Gm00312cDNA18kA 61.6598 5.517 56.143 39.1113 11.878 27.233 0.634307928 -0.65674472
Gm00012cDNA18kA 118.4088 7.884 110.524 67.71 12.54 55.17 0.571832499 -0.80633548
Gm00108cDNA18kA 23.6192 8.071 15.548 18.6187 12.725 5.894 0.788286648 -0.343207756
Gm00204cDNA18kA 108.3664 6.101 102.266 47.4655 12.143 35.322 0.438009383 -1.190966319
Gm00300cDNA18kA 46.0109 6.406 39.605 35.2845 12.246 23.038 0.766872632 -0.38294111
Gm00408cDNA18kA 26.0248 6.583 19.442 19.401 11.819 7.582 0.745481233 -0.42375606
Gm00504cDNA18kA 20.7589 6.342 14.417 16.7479 11.714 5.034 0.80678167 -0.309749789
Gm00600cDNA18kA 87.5743 6.211 81.363 45.8664 11.901 33.965 0.523742696 -0.933069875
Gm00696cDNA18kA 14.8402 6.116 8.724 16.2246 12.275 3.95 1.093287152 0.128672375
Gm00396cDNA18kA 36.0511 5.787 30.264 28.1416 12.403 15.739 0.780603088 -0.357338924
Gm00492cDNA18kA 12.761 5.392 7.369 15.6497 12.317 3.332 1.226369407 0.294393613
Gm00588cDNA18kA 22.8875 5.046 17.841 24.8848 12.235 12.65 1.087265975 0.120704906
Gm00684cDNA18kA 65.8217 5.047 60.774 50.7244 12.245 38.48 0.770633393 -0.375883393
Gm00792cDNA18kA 17.648 5.134 12.514 17.4883 12.238 5.25 0.990950816 -0.013114641
Gm00888cDNA18kA 11.1319 5.544 5.588 13.8359 12.076 1.76 1.242905524 0.313716638
Gm00984cDNA18kA 13.0209 7.481 5.539 14.3666 12.459 1.907 1.103349231 0.141889503
Gm01080cDNA18kA 188.2503 7.735 180.515 73.4068 12.529 60.878 0.389942539 -1.358666546

Total number of rows: 19200

Table truncated, full table size 1522 Kbytes.




Supplementary file Size Download File type/resource
GSM94950.txt.gz 1.1 Mb (ftp)(http) TXT
GSM94950_Cy3.tif.gz 76.8 Mb (ftp)(http) TIFF
GSM94950_Cy5.tif.gz 76.8 Mb (ftp)(http) TIFF

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