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| Status |
Public on Jan 01, 2007 |
| Title |
#149322 Soybean embryo, RCAT-Angora & Harovinton, London 2003 time course |
| Sample type |
RNA |
| |
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| Channel 1 |
| Source name |
RCAT 60dap L03
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
Hvtn 60dap L03
|
| Organism |
Glycine max |
| Characteristics |
Harovinton, soybean cultivar with low seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy5
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| |
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| |
| Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
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| Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity"
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| |
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| Submission date |
Feb 02, 2006 |
| Last update date |
May 10, 2006 |
| Contact name |
Sangeeta Dhaubhadel |
| E-mail(s) |
dhaubhadels@agr.gc.ca
|
| Phone |
519-457-1470 x670
|
| Fax |
519-457-3997
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| Organization name |
SCPFRC London
|
| Department |
Agriculture & Agrifood Canada
|
| Lab |
Plant Molecular Biology
|
| Street address |
1391 Sandford St
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| City |
London |
| State/province |
ON |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
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| Platform ID |
GPL3015 |
| Series (1) |
| GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
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| Data table header descriptions |
| ID_REF |
rearranged for LRGC scanner |
| CH1-VOL |
Cy3 intensity |
| CH1-Bkgd |
Cy3 background |
| CH1-sVOL |
Cy3 background subtracted intensity |
| CH2-VOL |
Cy5 intensity |
| CH2-Bkgd |
Cy5 background |
| CH2-sVOL |
Cy5 background subtracted intensity |
| RATIO |
CH2-VOL divided by CH1-VOL |
| VALUE |
log2 ratio |
| Data table |
| ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
| Gm00024cDNA18kA |
55.8873 |
15.093 |
40.794 |
29.4327 |
14.398 |
15.034 |
0.526643799 |
-0.925100584 |
| Gm00120cDNA18kA |
50.8679 |
13.546 |
37.322 |
32.3782 |
14.353 |
18.025 |
0.636515366 |
-0.651732752 |
| Gm00216cDNA18kA |
14.3211 |
12.24 |
2.081 |
15.5813 |
14.195 |
1.386 |
1.087996034 |
0.121673297 |
| Gm00312cDNA18kA |
74.6329 |
12.456 |
62.176 |
44.7242 |
14.271 |
30.453 |
0.599255824 |
-0.738756069 |
| Gm00012cDNA18kA |
94.0899 |
12.922 |
81.168 |
75.0217 |
14.046 |
60.976 |
0.797340628 |
-0.326731911 |
| Gm00108cDNA18kA |
25.8305 |
13.088 |
12.743 |
19.6523 |
14.207 |
5.445 |
0.760817638 |
-0.394377402 |
| Gm00204cDNA18kA |
88.4408 |
14.422 |
74.019 |
36.5521 |
15.145 |
21.407 |
0.413294543 |
-1.274757781 |
| Gm00300cDNA18kA |
54.1144 |
14.809 |
39.306 |
45.1968 |
15.24 |
29.956 |
0.835208373 |
-0.259791919 |
| Gm00408cDNA18kA |
48.0963 |
14.01 |
34.087 |
44.8327 |
14.757 |
30.075 |
0.932144468 |
-0.101374526 |
| Gm00504cDNA18kA |
19.4148 |
13.808 |
5.607 |
19.8692 |
14.753 |
5.116 |
1.023404825 |
0.033376941 |
| Gm00600cDNA18kA |
56.6739 |
14.256 |
42.418 |
52.2187 |
14.498 |
37.72 |
0.921388858 |
-0.118117943 |
| Gm00696cDNA18kA |
18.5644 |
15.1 |
3.465 |
18.4974 |
14.508 |
3.989 |
0.996390942 |
-0.005216189 |
| Gm00396cDNA18kA |
41.2863 |
14.771 |
26.516 |
31.1642 |
15.004 |
16.161 |
0.754831506 |
-0.405773454 |
| Gm00492cDNA18kA |
33.2202 |
13.065 |
20.155 |
23.4916 |
15.245 |
8.247 |
0.707148061 |
-0.499915781 |
| Gm00588cDNA18kA |
31.1298 |
11.472 |
19.658 |
32.2184 |
14.704 |
17.515 |
1.034969707 |
0.049588542 |
| Gm00684cDNA18kA |
60.172 |
11.163 |
49.009 |
59.9337 |
14.267 |
45.667 |
0.996039686 |
-0.005724869 |
| Gm00792cDNA18kA |
25.4847 |
11.362 |
14.123 |
19.4899 |
14.103 |
5.387 |
0.764768665 |
-0.386904682 |
| Gm00888cDNA18kA |
17.6978 |
11.864 |
5.834 |
16.769 |
14.153 |
2.616 |
0.947518901 |
-0.077773373 |
| Gm00984cDNA18kA |
17.9081 |
12.685 |
5.223 |
15.9331 |
14.34 |
1.593 |
0.88971471 |
-0.168585289 |
| Gm01080cDNA18kA |
365.7089 |
13.044 |
352.665 |
141.2949 |
14.444 |
126.851 |
0.386358932 |
-1.371986344 |
Total number of rows: 19200
Table truncated, full table size 1536 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM94953.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
| GSM94953_Cy3.tif.gz |
79.4 Mb |
(ftp)(http) |
TIFF |
| GSM94953_Cy5.tif.gz |
77.4 Mb |
(ftp)(http) |
TIFF |
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