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Sample GSM94954 Query DataSets for GSM94954
Status Public on Jan 01, 2007
Title #149323 Soybean embryo, RCAT-Angora & Harovinton, London 2003 time course
Sample type RNA
 
Channel 1
Source name Hvtn 60dap L03
Organism Glycine max
Characteristics Harovinton, soybean cultivar with low seed isoflavonoid content
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name RCAT 60dap L03
Organism Glycine max
Characteristics RCAT-Angora, soybean cultivar with high seed isoflavonoid content
Extracted molecule total RNA
Label Cy5
 
 
Description Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
Data processing Arrayvision LRGC scanner layout, background subtracted intensity"
 
Submission date Feb 02, 2006
Last update date May 10, 2006
Contact name Sangeeta Dhaubhadel
E-mail(s) dhaubhadels@agr.gc.ca
Phone 519-457-1470 x670
Fax 519-457-3997
Organization name SCPFRC London
Department Agriculture & Agrifood Canada
Lab Plant Molecular Biology
Street address 1391 Sandford St
City London
State/province ON
ZIP/Postal code N5V 4T3
Country Canada
 
Platform ID GPL3015
Series (1)
GSE4194 Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development

Data table header descriptions
ID_REF rearranged for LRGC scanner
CH1-VOL Cy3 intensity
CH1-Bkgd Cy3 background
CH1-sVOL Cy3 background subtracted intensity
CH2-VOL Cy5 intensity
CH2-Bkgd Cy5 background
CH2-sVOL Cy5 background subtracted intensity
RATIO CH2-VOL divided by CH1-VOL
VALUE log2 ratio

Data table
ID_REF CH1-VOL CH1-Bkgd CH1-sVOL CH2-VOL CH2-Bkgd CH2-sVOL RATIO VALUE
Gm00024cDNA18kA 106.0167 13.336 92.68 27.7127 8.496 19.217 0.261399383 -1.935672357
Gm00120cDNA18kA 76.6992 11.668 65.031 28.872 8.062 20.81 0.376431566 -1.409540482
Gm00216cDNA18kA 13.3732 11.109 2.264 10.8934 7.975 2.918 0.814569437 -0.295890409
Gm00312cDNA18kA 127.7528 10.646 117.107 44.0155 7.97 36.046 0.34453648 -1.53727135
Gm00012cDNA18kA 196.4687 10.631 185.838 61.1673 7.76 53.408 0.311333561 -1.683466991
Gm00108cDNA18kA 38.3007 11.06 27.24 17.678 7.821 9.857 0.461558144 -1.115415695
Gm00204cDNA18kA 80.4165 11.565 68.851 40.4984 7.829 32.669 0.50360809 -0.989626635
Gm00300cDNA18kA 117.537 12.114 105.423 44.4298 7.9 36.53 0.378006925 -1.403515429
Gm00408cDNA18kA 96.1786 12.524 83.655 30.8545 8.098 22.757 0.320804212 -1.64023501
Gm00504cDNA18kA 40.3765 12.157 28.219 16.7256 7.976 8.749 0.414240957 -1.271457892
Gm00600cDNA18kA 121.0544 11.668 109.386 36.2261 7.732 28.494 0.299254715 -1.740554116
Gm00696cDNA18kA 21.7211 11.053 10.668 13.2609 8.097 5.164 0.610507755 -0.711918473
Gm00396cDNA18kA 46.133 10.682 35.452 25.2006 8.357 16.844 0.546259727 -0.87234103
Gm00492cDNA18kA 27.9401 11.04 16.9 17.7885 8.995 8.793 0.636665581 -0.651392323
Gm00588cDNA18kA 129.0283 10.709 118.319 40.1772 9.033 31.145 0.311382852 -1.6832386
Gm00684cDNA18kA 121.1486 9.822 111.326 43.3524 7.995 35.358 0.357844829 -1.482593964
Gm00792cDNA18kA 19.3819 9.308 10.074 13.8103 7.803 6.007 0.712535923 -0.488965345
Gm00888cDNA18kA 16.4095 9.388 7.021 10.9396 7.992 2.948 0.666662604 -0.584971293
Gm00984cDNA18kA 13.3838 9.756 3.627 10.5672 7.95 2.617 0.789551547 -0.340894637
Gm01080cDNA18kA 170.8165 10.227 160.589 99.3654 7.831 91.534 0.581708442 -0.781631855

Total number of rows: 19200

Table truncated, full table size 1513 Kbytes.




Supplementary file Size Download File type/resource
GSM94954.txt.gz 1.1 Mb (ftp)(http) TXT
GSM94954_Cy3.tif.gz 78.0 Mb (ftp)(http) TIFF
GSM94954_Cy5.tif.gz 75.2 Mb (ftp)(http) TIFF

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