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Status |
Public on Jan 01, 2007 |
Title |
#149323 Soybean embryo, RCAT-Angora & Harovinton, London 2003 time course |
Sample type |
RNA |
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Channel 1 |
Source name |
Hvtn 60dap L03
|
Organism |
Glycine max |
Characteristics |
Harovinton, soybean cultivar with low seed isoflavonoid content
|
Extracted molecule |
total RNA |
Label |
Cy3
|
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Channel 2 |
Source name |
RCAT 60dap L03
|
Organism |
Glycine max |
Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
Extracted molecule |
total RNA |
Label |
Cy5
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Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
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Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity"
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Submission date |
Feb 02, 2006 |
Last update date |
May 10, 2006 |
Contact name |
Sangeeta Dhaubhadel |
E-mail(s) |
dhaubhadels@agr.gc.ca
|
Phone |
519-457-1470 x670
|
Fax |
519-457-3997
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Organization name |
SCPFRC London
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Department |
Agriculture & Agrifood Canada
|
Lab |
Plant Molecular Biology
|
Street address |
1391 Sandford St
|
City |
London |
State/province |
ON |
ZIP/Postal code |
N5V 4T3 |
Country |
Canada |
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Platform ID |
GPL3015 |
Series (1) |
GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
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Data table header descriptions |
ID_REF |
rearranged for LRGC scanner |
CH1-VOL |
Cy3 intensity |
CH1-Bkgd |
Cy3 background |
CH1-sVOL |
Cy3 background subtracted intensity |
CH2-VOL |
Cy5 intensity |
CH2-Bkgd |
Cy5 background |
CH2-sVOL |
Cy5 background subtracted intensity |
RATIO |
CH2-VOL divided by CH1-VOL |
VALUE |
log2 ratio |
Data table |
ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
Gm00024cDNA18kA |
106.0167 |
13.336 |
92.68 |
27.7127 |
8.496 |
19.217 |
0.261399383 |
-1.935672357 |
Gm00120cDNA18kA |
76.6992 |
11.668 |
65.031 |
28.872 |
8.062 |
20.81 |
0.376431566 |
-1.409540482 |
Gm00216cDNA18kA |
13.3732 |
11.109 |
2.264 |
10.8934 |
7.975 |
2.918 |
0.814569437 |
-0.295890409 |
Gm00312cDNA18kA |
127.7528 |
10.646 |
117.107 |
44.0155 |
7.97 |
36.046 |
0.34453648 |
-1.53727135 |
Gm00012cDNA18kA |
196.4687 |
10.631 |
185.838 |
61.1673 |
7.76 |
53.408 |
0.311333561 |
-1.683466991 |
Gm00108cDNA18kA |
38.3007 |
11.06 |
27.24 |
17.678 |
7.821 |
9.857 |
0.461558144 |
-1.115415695 |
Gm00204cDNA18kA |
80.4165 |
11.565 |
68.851 |
40.4984 |
7.829 |
32.669 |
0.50360809 |
-0.989626635 |
Gm00300cDNA18kA |
117.537 |
12.114 |
105.423 |
44.4298 |
7.9 |
36.53 |
0.378006925 |
-1.403515429 |
Gm00408cDNA18kA |
96.1786 |
12.524 |
83.655 |
30.8545 |
8.098 |
22.757 |
0.320804212 |
-1.64023501 |
Gm00504cDNA18kA |
40.3765 |
12.157 |
28.219 |
16.7256 |
7.976 |
8.749 |
0.414240957 |
-1.271457892 |
Gm00600cDNA18kA |
121.0544 |
11.668 |
109.386 |
36.2261 |
7.732 |
28.494 |
0.299254715 |
-1.740554116 |
Gm00696cDNA18kA |
21.7211 |
11.053 |
10.668 |
13.2609 |
8.097 |
5.164 |
0.610507755 |
-0.711918473 |
Gm00396cDNA18kA |
46.133 |
10.682 |
35.452 |
25.2006 |
8.357 |
16.844 |
0.546259727 |
-0.87234103 |
Gm00492cDNA18kA |
27.9401 |
11.04 |
16.9 |
17.7885 |
8.995 |
8.793 |
0.636665581 |
-0.651392323 |
Gm00588cDNA18kA |
129.0283 |
10.709 |
118.319 |
40.1772 |
9.033 |
31.145 |
0.311382852 |
-1.6832386 |
Gm00684cDNA18kA |
121.1486 |
9.822 |
111.326 |
43.3524 |
7.995 |
35.358 |
0.357844829 |
-1.482593964 |
Gm00792cDNA18kA |
19.3819 |
9.308 |
10.074 |
13.8103 |
7.803 |
6.007 |
0.712535923 |
-0.488965345 |
Gm00888cDNA18kA |
16.4095 |
9.388 |
7.021 |
10.9396 |
7.992 |
2.948 |
0.666662604 |
-0.584971293 |
Gm00984cDNA18kA |
13.3838 |
9.756 |
3.627 |
10.5672 |
7.95 |
2.617 |
0.789551547 |
-0.340894637 |
Gm01080cDNA18kA |
170.8165 |
10.227 |
160.589 |
99.3654 |
7.831 |
91.534 |
0.581708442 |
-0.781631855 |
Total number of rows: 19200
Table truncated, full table size 1513 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM94954.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
GSM94954_Cy3.tif.gz |
78.0 Mb |
(ftp)(http) |
TIFF |
GSM94954_Cy5.tif.gz |
75.2 Mb |
(ftp)(http) |
TIFF |
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