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Sample GSM949600 Query DataSets for GSM949600
Status Public on Jun 09, 2015
Title SUM159PT_BT474_AVG_Beta
Sample type genomic
 
Source name breast cancer cell lines
Organism Homo sapiens
Characteristics cell line: SUM159PT_BT474
cell type: Heterofusion
Extracted molecule genomic DNA
Extraction protocol standard procedure
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description HumanMethylation27_9
Data processing BeadStudio software (version 2011.1)
 
Submission date Jun 18, 2012
Last update date Jun 09, 2015
Contact name Kornelia Polyak
E-mail(s) kornelia_polyak@dfci.harvard.edu
Phone 617-632-2106
Organization name Dana-Farber Cancer Institute
Department Medical Oncology
Lab Polyak
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platform ID GPL8490
Series (2)
GSE38548 Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer
GSE38791 Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [methylation27]

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000292 0.7637 0
cg00002426 0.07165 0
cg00003994 0.33161 0
cg00005847 0.60697 0
cg00006414 0.08853 0
cg00007981 0.36647 0
cg00008493 0.94711 0
cg00008713 0.03841 0
cg00009407 0.02461 0
cg00010193 0.45793 0
cg00011459 0.77448 0
cg00012199 0.03194 0
cg00012386 0.07515 0
cg00012792 0.03322 0
cg00013618 0.16668 0
cg00014085 0.03918 0
cg00014837 0.31139 0
cg00015770 0.69275 0
cg00016968 0.31931 0
cg00019495 0.30225 0

Total number of rows: 27578

Table truncated, full table size 564 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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