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Sample GSM958742 Query DataSets for GSM958742
Status Public on Jul 12, 2012
Title Caltech_RnaSeq_GM12878_2x75_400
Sample type SRA
 
Source name GM12878
Organism Homo sapiens
Characteristics datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell sex: U
readtype: 2x75
readtype description: Paired 75 nt reads
insertlength: 400
insertlength description: insert length of 400nt
labexpid: 10516
mapalgorithm: TH1014
mapalgorithm description: TopHat v1.0.14
readtype: 2x75
readtype description: Paired 75 nt reads
insertlength: 400
insertlength description: insert length of 400nt
treatment: None
treatment description: No special treatment or protocol applies
labexpid: 10516
mapalgorithm: TH1014
mapalgorithm description: TopHat v1.0.14
readtype: 2x75
readtype description: Paired 75 nt reads
replicate: 2
Biomaterial provider Coriell
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq
 
Submission date Jul 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE33480 RNA-seq from ENCODE/Caltech
Relations
Reanalyzed by GSE97211
SRA SRX159828
BioSample SAMN01087956
Named Annotation GSM958742_hg19_wgEncodeCaltechRnaSeqGm12878R2x75Th1014Il400USigRep2V4.bigWig

Supplementary file Size Download File type/resource
GSM958742_hg19_wgEncodeCaltechRnaSeqGm12878R2x75Il400ExonsGencV3cRep2V3.gtf.gz 7.3 Mb (ftp)(http) GTF
GSM958742_hg19_wgEncodeCaltechRnaSeqGm12878R2x75Il400GeneDeNovoRep2V3.gtf.gz 940.0 Kb (ftp)(http) GTF
GSM958742_hg19_wgEncodeCaltechRnaSeqGm12878R2x75Il400GeneGencV3cRep2V3.gtf.gz 1.8 Mb (ftp)(http) GTF
GSM958742_hg19_wgEncodeCaltechRnaSeqGm12878R2x75Il400JunctionsRep2V3.bigBed 3.2 Mb (ftp)(http) BIGBED
GSM958742_hg19_wgEncodeCaltechRnaSeqGm12878R2x75Il400SplicesRep2V2.bam 423.3 Mb (ftp)(http) BAM
GSM958742_hg19_wgEncodeCaltechRnaSeqGm12878R2x75Il400SplicesRep2V2.bam.bai.gz 549.9 Kb (ftp)(http) BAI
GSM958742_hg19_wgEncodeCaltechRnaSeqGm12878R2x75Il400TSSRep2V3.gtf.gz 2.9 Mb (ftp)(http) GTF
GSM958742_hg19_wgEncodeCaltechRnaSeqGm12878R2x75Il400TranscriptDeNovoRep2V3.gtf.gz 3.5 Mb (ftp)(http) GTF
GSM958742_hg19_wgEncodeCaltechRnaSeqGm12878R2x75Il400TranscriptGencV3cRep2V3.gtf.gz 12.5 Mb (ftp)(http) GTF
GSM958742_hg19_wgEncodeCaltechRnaSeqGm12878R2x75Th1014Il400USigRep2V4.bigWig 125.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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