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Sample GSM958751 Query DataSets for GSM958751
Status Public on Jul 12, 2012
Title Caltech_RnaSeq_LHCN-M2_2x75_200_DIFF_7d
Sample type SRA
 
Source name LHCN-M2
Organism Homo sapiens
Characteristics datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
readtype: 2x75
readtype description: Paired 75 nt reads
insertlength: 200
insertlength description: insert length of 200nt
labexpid: 11622
labversion: myocyte
mapalgorithm: TH1014
mapalgorithm description: TopHat v1.0.14
readtype: 2x75
readtype description: Paired 75 nt reads
insertlength description: insert length of 200nt
treatment: DIFF_7d
treatment description: Myocytes differentiated from myoblasts for 7 days. See specific cell protocol for treatment details. (Wold)
labexpid: 11622
labversion: myocyte
mapalgorithm: TH1014
mapalgorithm description: TopHat v1.0.14
readtype: 2x75
readtype description: Paired 75 nt reads
replicate: 1
Biomaterial provider Dr. Woodring Wright
Treatment protocol DIFF_7d
Growth protocol LHCNM2_Wold_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCaltechRnaSeq
 
Submission date Jul 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE33480 RNA-seq from ENCODE/Caltech
Relations
SRA SRX159837
BioSample SAMN01087965
Named Annotation GSM958751_hg19_wgEncodeCaltechRnaSeqLhcnm2R2x75Th1014Il200Diff7dSigRep1V4.bigWig

Supplementary file Size Download File type/resource
GSM958751_hg19_wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dExonsGencV3cRep1V3.gtf.gz 7.6 Mb (ftp)(http) GTF
GSM958751_hg19_wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dGeneDeNovoRep1V3.gtf.gz 1.2 Mb (ftp)(http) GTF
GSM958751_hg19_wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dGeneGencV3cRep1V3.gtf.gz 1.9 Mb (ftp)(http) GTF
GSM958751_hg19_wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dJunctionsRep1V3.bigBed 4.8 Mb (ftp)(http) BIGBED
GSM958751_hg19_wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dSplicesRep1.bam 2.1 Gb (ftp)(http) BAM
GSM958751_hg19_wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dSplicesRep1.bam.bai.gz 848.4 Kb (ftp)(http) BAI
GSM958751_hg19_wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dTSSRep1V3.gtf.gz 3.0 Mb (ftp)(http) GTF
GSM958751_hg19_wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dTrnscrptDeNovoRep1V3.gtf.gz 4.9 Mb (ftp)(http) GTF
GSM958751_hg19_wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dTrnscrptGencV3cRep1V3.gtf.gz 13.0 Mb (ftp)(http) GTF
GSM958751_hg19_wgEncodeCaltechRnaSeqLhcnm2R2x75Th1014Il200Diff7dSigRep1V4.bigWig 315.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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