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Sample GSM977 Query DataSets for GSM977
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time5.0hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.11
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n63
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 507 496 128 463 119 348 344 331 114 445 .808 0 -.167 .938 8 13 1.076 1.123 .93 .891 .691 1081 69 12 23 77 88 -.167
2 502 488 130 489 145 348 344 331 139 470 .843 0 .097 .546 8 11 .897 .935 1.115 1.069 .912 886 69 11 22 87 98 .097
3 497 496 529 929 593 347 336 323 570 893 .906 0 .108 1.057 30 31 .892 .928 1.121 1.078 .987 786 69 11 22 97 108 .108
4 501 496 191 502 158 349 344 331 152 483 .932 0 -.33 .776 26 28 1.209 1.257 .827 .796 .81 786 69 11 22 107 118 -.33
5 505 504 493 1153 809 351 344 331 778 1109 .957 0 .658 1.636 31 43 .609 .634 1.641 1.578 1.555 786 69 11 22 117 128 .658
6 512 512 257 589 237 355 352 338 228 566 .92 0 -.173 .94 28 33 1.084 1.127 .922 .887 .789 786 69 11 22 127 138 -.173
7 514 512 214 556 204 357 352 338 197 535 .936 0 -.119 .991 30 30 1.049 1.086 .953 .921 .861 786 69 11 22 137 148 -.119
8 511 512 103 428 68 357 360 346 66 412 .663 0 -.642 .778 15 18 1.515 1.561 .66 .641 .477 786 69 11 22 147 158 -.642
9 516 512 232 569 209 364 360 346 201 547 .912 0 -.207 .956 31 33 1.11 1.154 .901 .866 .849 786 69 11 22 157 168 -.207
10 516 512 211 548 188 367 360 346 181 527 .863 0 -.221 .968 26 27 1.122 1.166 .891 .858 .799 786 69 11 22 167 178 -.221
11 517 512 246 597 237 370 360 346 228 574 .903 0 -.11 1.119 27 30 1.038 1.079 .963 .927 .855 786 69 11 22 177 188 -.11
12 516 512 276 639 279 370 360 346 268 614 .92 0 -.042 1 30 31 .989 1.03 1.011 .971 .906 786 69 11 22 187 198 -.042
13 510 504 92 446 86 378 360 346 83 429 .761 0 -.149 .723 10 11 1.07 1.108 .935 .902 .967 786 69 11 22 197 208 -.149
14 549 512 153 489 129 422 360 346 124 470 .882 0 -.303 .667 11 13 1.186 1.234 .843 .81 .95 786 69 11 22 207 218 -.303
15 578 512 173 542 182 453 360 346 175 521 .931 0 .017 .824 17 15 .951 .989 1.052 1.012 1.09 786 69 11 22 217 228 .017
16 650 512 1741 2493 2133 773 360 346 2051 2397 .963 0 .236 1.281 43 43 .816 .849 1.225 1.178 1.254 786 69 11 22 227 238 .236
17 656 512 196 523 171 761 352 338 165 503 .916 0 -.248 .89 17 20 1.146 1.188 .872 .842 .885 786 69 11 22 237 248 -.248
18 623 512 82 364 20 713 344 331 19 350 .638 0 -2.11 .5 13 4 4.1 4.316 .244 .232 .298 786 69 11 22 247 258 -2.11
19 591 512 35602 631 287 673 344 331 276 607 0 0 -7.011 .008 92 47 124.049 128.993 .008 .008 0 786 69 11 22 257 268 -7.011
20 522 512 1341 6948 6604 349 344 331 6350 6681 .84 0 2.243 4.473 59 81 .203 .211 4.925 4.735 4.173 786 69 11 22 267 278 2.243

Total number of rows: 7680

Table truncated, full table size 943 Kbytes.




Supplementary data files not provided
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