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Sample GSM980 Query DataSets for GSM980
Status Public on Feb 12, 2002
Title alpha factor release sample013
Sample type RNA
 
Channel 1
Source name asynchronous control
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 13
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description '
ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n40
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 262 264 268 608 272 337 336 425 345 770 .927 0 .364 .967 20 23 .985 .777 1.015 1.287 .84 1213 69 25 36 93 104 .364
2 268 272 591 909 565 343 344 435 716 1151 .968 0 .277 .982 42 44 1.046 .825 .956 1.212 .846 1045 69 25 36 103 114 .277
3 273 272 235 571 227 348 344 435 288 723 .971 0 .293 1.137 27 28 1.035 .816 .966 1.226 .913 959 69 25 36 113 124 .293
4 280 280 88 413 61 353 352 446 77 523 .853 0 -.193 .875 20 15 1.443 1.143 .693 .875 .656 959 69 25 36 123 134 -.193
5 289 288 740 1348 988 359 360 456 1250 1706 .966 0 .756 1.228 46 50 .749 .592 1.335 1.689 1.225 964 69 25 36 133 144 .756
6 294 296 145 515 155 361 360 456 196 652 .92 0 .435 1.086 23 21 .935 .74 1.069 1.352 .971 955 69 25 36 143 154 .435
7 299 296 144 434 74 366 360 456 93 549 .903 0 -.631 .579 36 23 1.946 1.548 .514 .646 .545 955 69 25 36 153 164 -.631
8 300 304 354 756 396 365 360 456 501 957 .97 0 .501 1.078 55 57 .894 .707 1.119 1.415 1.035 955 69 25 36 163 174 .501
9 298 296 111 450 98 358 352 446 124 570 .928 0 .16 .789 21 20 1.133 .895 .883 1.117 .769 950 69 25 36 173 184 .16
10 298 296 59 396 36 360 360 456 45 501 .887 0 -.391 .819 15 10 1.639 1.311 .61 .763 .654 950 69 25 36 183 194 -.391
11 296 296 114 457 105 360 352 446 132 578 .89 0 .212 1 23 23 1.086 .864 .921 1.158 .76 950 69 25 36 193 204 .212
12 291 288 49 377 25 356 352 446 31 477 .451 0 -.661 .682 13 1 1.96 1.581 .51 .633 .392 950 69 25 36 203 214 -.661
13 286 280 31 358 6 355 352 446 7 453 .534 0 -2.147 .667 5 1 5.167 4.429 .194 .226 .361 950 69 25 36 213 224 -2.147
14 285 280 73 400 56 352 344 435 71 506 .912 0 -.04 .778 13 11 1.304 1.028 .767 .973 .653 950 69 25 36 223 234 -.04
15 286 280 203 520 176 348 344 435 223 658 .958 0 .136 1 23 23 1.153 .91 .867 1.099 .741 950 69 25 36 233 244 .136
16 292 288 46 390 38 356 352 446 48 494 .848 0 .061 .683 7 7 1.211 .958 .826 1.043 .649 950 69 25 36 243 254 .061
17 301 296 173 484 132 361 352 446 167 613 .933 0 -.051 .774 24 24 1.311 1.036 .763 .965 .706 950 69 25 36 253 264 -.051
18 299 296 65 398 38 361 360 456 48 504 .866 0 -.437 .588 14 8 1.711 1.354 .585 .738 .617 950 69 25 36 263 274 -.437
19 298 296 22550 489 129 361 360 456 163 619 0 0 -7.112 .007 72 34 174.806 138.344 .006 .007 0 950 69 25 36 273 284 -7.112
20 297 296 726 3561 3209 358 352 446 4062 4508 .818 0 2.484 4 60 72 .226 .179 4.42 5.595 3.735 955 69 25 36 283 294 2.484

Total number of rows: 7680

Table truncated, full table size 927 Kbytes.




Supplementary data files not provided

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