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Sample GSM981244 Query DataSets for GSM981244
Status Public on Aug 07, 2012
Title CSHL_RnaSeq_IMR90_cytosol_longPolyA (superseded by GSE90260)
Sample type SRA
 
Source name IMR90
Organism Homo sapiens
Characteristics datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 045C,046C,046C,046C,045C,045C
labexpid: LID45612,LID45611,LID45612,LID45612,LID45611,LID45611
labversion: iIDR
readtype: 2x101D
readtype description: Paired 101 nt directed reads
replicate: 1,2
spikeinpool: Nist14
localization description: The fluid between the cells outer membrane and the nucleus
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 045C,046C
labexpid: LID45611,LID45612
labversion: iIDR
readtype: 2x101D
readtype description: Paired 101 nt directed reads
spikeinpool: Nist14
Biomaterial provider ATCC
Extracted molecule polyA RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description ****************************
GSM981244 record metadata submitted on Aug 06 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90260
****************************
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq
 
Submission date Aug 06, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (2)
GSE26284 ENCODE Cold Spring Harbor Labs Long RNA-seq
GSE30567 ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)
Relations
Superseded by GSE90260
SRA SRX174313
BioSample SAMN01103814
Named Annotation GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapMinusRep1.bigWig
Named Annotation GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapMinusRep2.bigWig
Named Annotation GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapPlusRep1.bigWig
Named Annotation GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapPlusRep2.bigWig

Supplementary file Size Download File type/resource
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapContigs.bedRnaElements.gz 7.9 Mb (ftp)(http) BEDRNAELEMENTS
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapExonsDeNovo.gff.gz 13.2 Mb (ftp)(http) GFF
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapExonsGencV10.gtf.gz 19.4 Mb (ftp)(http) GTF
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapGeneDeNovo.gff.gz 990.2 Kb (ftp)(http) GFF
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapGeneGencV10.gtf.gz 1.8 Mb (ftp)(http) GTF
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapJunctions.bedRnaElements.gz 9.3 Mb (ftp)(http) BEDRNAELEMENTS
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapMinusRep1.bigWig 54.2 Mb (ftp)(http) BIGWIG
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapMinusRep2.bigWig 88.8 Mb (ftp)(http) BIGWIG
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapPlusRep1.bigWig 55.8 Mb (ftp)(http) BIGWIG
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapPlusRep2.bigWig 91.7 Mb (ftp)(http) BIGWIG
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapProtocolRep1V2.pdf.gz 309.5 Kb (ftp)(http) PDF
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapProtocolRep2V2.pdf.gz 338.7 Kb (ftp)(http) PDF
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapSpikeinsRep1.spikeins.bam 390.4 Mb (ftp)(http) BAM
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapSpikeinsRep2.spikeins.bam 273.4 Mb (ftp)(http) BAM
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapTranscriptDeNovo.gtf.gz 1.4 Mb (ftp)(http) GTF
GSM981244_hg19_wgEncodeCshlLongRnaSeqImr90CytosolPapTranscriptGencV10.gtf.gz 4.8 Mb (ftp)(http) GTF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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