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Sample GSM984 Query DataSets for GSM984
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time4.5hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.10
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n81
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1240 1208 713 1058 730 341 328 373 829 1202 .968 0 .217 1 21 31 .977 .86 1.024 1.163 1.011 1077 83 48 59 29 40 .217
2 1275 1232 1796 2221 1885 354 336 382 2142 2524 .984 0 .254 .97 47 55 .953 .838 1.05 1.193 1.011 878 87 47 58 39 50 .254
3 1328 1248 1420 1857 1513 380 344 391 1719 2110 .983 0 .276 1.079 36 55 .939 .826 1.065 1.211 .942 757 87 47 58 49 60 .276
4 1357 1272 599 920 560 396 360 409 636 1045 .938 0 .086 .86 27 37 1.07 .942 .935 1.062 .882 755 87 47 58 59 70 .086
5 1366 1280 1954 3375 3007 402 368 418 3417 3835 .984 0 .806 1.502 42 60 .65 .572 1.539 1.749 1.461 755 87 47 58 69 80 .806
6 1394 1304 330 656 272 418 384 436 309 745 .91 0 -.095 .776 14 29 1.213 1.068 .824 .936 .766 755 87 47 58 79 90 -.095
7 1409 1328 593 878 478 425 400 455 543 998 .939 0 -.127 .781 33 45 1.241 1.092 .806 .916 .714 750 87 47 58 89 100 -.127
8 1429 1352 651 807 399 429 408 464 453 917 .911 0 -.523 .6 40 56 1.632 1.437 .613 .696 .573 739 88 47 58 99 110 -.523
9 1474 1384 526 700 284 444 416 473 322 795 .9 0 -.708 .562 24 29 1.852 1.634 .54 .612 .686 769 87 46 57 109 120 -.708
10 1511 1416 464 704 280 467 424 482 318 800 .931 0 -.545 .571 21 32 1.657 1.459 .603 .685 .752 758 87 46 57 119 130 -.545
11 1511 1416 648 740 316 465 424 482 359 841 .933 0 -.852 .41 22 28 2.051 1.805 .488 .554 .71 751 87 46 57 129 140 -.852
12 1515 1424 649 787 363 466 424 482 412 894 .941 0 -.656 .464 27 37 1.788 1.575 .559 .635 .713 751 87 46 57 139 150 -.656
13 1499 1424 136 485 61 463 424 482 69 551 .568 0 -.979 .612 4 14 2.23 1.971 .449 .507 .297 751 87 46 57 149 160 -.979
14 1517 1400 196 592 184 475 408 464 209 673 .953 0 .093 .8 8 20 1.065 .938 .939 1.066 .926 756 87 46 57 159 170 .093
15 1537 1392 469 854 446 484 408 464 506 970 .933 0 .11 .859 19 25 1.052 .927 .951 1.079 1.072 749 87 46 57 169 180 .11
16 1539 1384 646 876 468 485 408 464 531 995 .926 0 -.283 .584 16 29 1.38 1.217 .724 .822 .913 739 89 46 57 179 190 -.283
17 1544 1392 363 659 251 479 408 464 285 749 .919 0 -.349 .687 21 26 1.446 1.274 .691 .785 .773 770 88 45 56 189 200 -.349
18 1529 1416 29 407 439 408 464 463 .698 0 .363 2 3 .217 755 88 45 56 199 210
19 1529 1448 30929 806 398 427 408 464 452 916 0 0 -6.097 .016 73 45 77.711 68.427 .013 .015 0 751 88 45 56 209 220 -6.097
20 1544 1472 3029 3835 3427 428 408 464 3894 4358 .067 0 .362 1.857 56 71 .884 .778 1.131 1.286 .045 757 88 45 56 219 230 .362

Total number of rows: 7680

Table truncated, full table size 946 Kbytes.




Supplementary data files not provided

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