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Sample GSM984165 Query DataSets for GSM984165
Status Public on Aug 10, 2012
Title 2-6hr Embryo (Replicate 2) extraction2_seq1 aliquote 1
Sample type SRA
 
Source name Drosophila melanogaster 2-6hr embryo
Organism Drosophila melanogaster
Characteristics Stage: 2-6hr embryo
Extracted molecule total RNA
Extraction protocol total RNA from 2-6hr embryo, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description small RNAs
Data processing raw sequences were clipped by 3' linker sequences recognition, and select clipped sequences longer than 18 nt
 
Submission date Aug 10, 2012
Last update date Jun 11, 2013
Contact name DCC modENCODE
E-mail(s) help@modencode.org
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Lab modENCODE DCC
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
 
Platform ID GPL9058
Series (1)
GSE40039 Drosophila melanogaster 2-6hr embryo
Relations
BioSample SAMN02197460

Data table header descriptions
SEQUENCE small RNA sequence
COUNT number of times small RNA was sequenced

Data table
SEQUENCE COUNT
TAATTGGTCCTTTTAATTTGTTACTTTTTAGTTA 1
TATGGTGTAATGGTTAACATTGTTGCCTTTTTTATG 1
TCGTAGGCACCTTAAATCTTATGCACCCTAAATCGT 1
GCGTTATCACTGTCTGAAGCTT 1
TGATTTGATATCCGTGTATCAGTACAG 1
TCACCTAATATCTCCTCTTTTTCTT 1
TATCACAGTCTTATCCGGTCACCTAAAAAAAAAATA 1
GGCTCCAATGCTGCGATGATGC 1
GATCAAGTGCCGCAAAAAAGAAGAT 1
TGGGCGCGGTCCTCGGCGGGGTTACTTTATGA 1
GTTCGAATGAAGCAATGAGTGCA 1
GAAATTTCTTTAAGCCTTACCT 3
GCATATGTTATTTAACACCAATTTTTTTTTTATCAT 1
AGTGCATGTACCCTTTTT 1
AGTTGCTTCCAGTTGCTCCCTATTTTAAAAAACA 1
CGTAAACGATGTCTACTATCC 1
ATCGTGTCGGAACTATTTCCAATCCA 1
TCCTCGGTGGTATCGTGGTGAGTTTCCGCGCCT 1
TCCCATGGTCTAGTGGCTAAAATTCTTTTCTCT 1
CCCATGGCGTCTATCATATCTCGTCCA 1

Total number of rows: 970135

Table truncated, full table size 29662 Kbytes.




Supplementary file Size Download File type/resource
GSM984165_2-6hr_rep2.fa.gz 44.1 Mb (ftp)(http) FA
Raw data provided as supplementary file
Processed data included within Sample table

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