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Sample GSM992318 Query DataSets for GSM992318
Status Public on Jan 22, 2015
Title CC with lung metastasis, primary tumor PEM-11P
Sample type RNA
Source name CC with lung metastasis
Organism Homo sapiens
Characteristics tissue: tumor endothelium from cholangiocarcinoma
disease state: CC with lung metastasis
Growth protocol Enriched tumor endothelium was obtained by laser capture microdissection
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the PicoPure protocol (Arcturus, Mountain View, CA)
Label biotin
Label protocol RNA was amplified with two linear amplification steps by in vitro transcription using the MEGAscript T7 kit (Ambion, Austin, TX) followed by the labeling step using the BioArray HighYield RNA Transcript Labeling Kit T3 from Enzo Life Sciences (Farmingdale, NY).
Hybridization protocol Labeled cRNA was hybridized onto Affymetix GeneChip HG-U133 Plus 2.0 Arrays.
Scan protocol standard Affymetrix protocol
Data processing MAS 5.0
Submission date Aug 24, 2012
Last update date Jan 22, 2015
Contact name Xin Wei Wang
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
Platform ID GPL570
Series (1)
GSE40367 Gene expression analysis of liver and colon cancer primary tumors and metastasis

Data table header descriptions
VALUE log2 MAS 5.0 signal

Data table
1007_s_at 10.09462738
1053_at 6.924270153
117_at 3.659821033
121_at 6.986879826
1255_g_at 3.321928024
1294_at 8.690037727
1316_at 4.744595528
1320_at 3.321928024
1405_i_at 7.967024803
1431_at 3.403102875
1438_at 3.321928024
1487_at 9.341125488
1494_f_at 4.932534218
1552256_a_at 6.28190279
1552257_a_at 8.160909653
1552258_at 5.743323326
1552261_at 3.820206642
1552263_at 5.792263031
1552264_a_at 5.129358292
1552266_at 3.321928024

Total number of rows: 54675

Table truncated, full table size 1214 Kbytes.

Supplementary file Size Download File type/resource
GSM992318_Guoling_PEM_11AC_083007.CEL.gz 5.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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