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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Lobe: Extract61_le2
Sample type
RNA
Source name
brain, Right Frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
4542.6875
P
0.002275
AFFX-BioB-M_at
6967.956
P
0.000446
AFFX-BioB-3_at
3828.0073
P
0.008440
AFFX-BioC-5_at
11159.646
P
0.000147
AFFX-BioC-3_at
7451.2817
P
0.000127
AFFX-BioDn-5_at
8537.601
P
0.000195
AFFX-BioDn-3_at
77702.99
P
0.000169
AFFX-CreX-5_at
83515.81
P
0.000044
AFFX-CreX-3_at
143039.08
P
0.000044
AFFX-DapX-5_at
129.26236
A
0.712257
AFFX-DapX-M_at
781.9051
A
0.216524
AFFX-DapX-3_at
107.392456
A
0.910522
AFFX-LysX-5_at
398.80878
A
0.425962
AFFX-LysX-M_at
923.8719
A
0.300606
AFFX-LysX-3_at
141.27437
A
0.631562
AFFX-PheX-5_at
390.65182
A
0.699394
AFFX-PheX-M_at
115.77616
A
0.804734
AFFX-PheX-3_at
222.89066
A
0.783476
AFFX-ThrX-5_at
104.50563
A
0.843268
AFFX-ThrX-M_at
195.36194
A
0.603080
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99439.CEL.gz
3.5 Mb
(ftp) (http) CEL
