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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Lobe: Extract63_le1
Sample type
RNA
Source name
brain, Right Frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326697 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1288.7084
P
0.006187
AFFX-BioB-M_at
2829.8853
P
0.000340
AFFX-BioB-3_at
1402.3519
P
0.007620
AFFX-BioC-5_at
4165.1562
P
0.000258
AFFX-BioC-3_at
3147.4377
P
0.000195
AFFX-BioDn-5_at
3301.0366
P
0.000195
AFFX-BioDn-3_at
28400.58
P
0.000169
AFFX-CreX-5_at
39181.35
P
0.000044
AFFX-CreX-3_at
57992.977
P
0.000044
AFFX-DapX-5_at
181.46494
A
0.440646
AFFX-DapX-M_at
110.89112
A
0.514890
AFFX-DapX-3_at
43.807426
A
0.876428
AFFX-LysX-5_at
63.443623
A
0.794268
AFFX-LysX-M_at
35.452602
A
0.868639
AFFX-LysX-3_at
88.314445
A
0.617401
AFFX-PheX-5_at
15.118677
A
0.957038
AFFX-PheX-M_at
23.229492
A
0.978098
AFFX-PheX-3_at
105.25255
A
0.686277
AFFX-ThrX-5_at
17.554478
A
0.749204
AFFX-ThrX-M_at
182.39378
A
0.425962
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99442.CEL.gz
3.5 Mb
(ftp) (http) CEL
