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Sample GSM99445 Query DataSets for GSM99445
Status Public on Mar 08, 2006
Title brain, Right Frontal Lobe: Extract64_le2
Sample type RNA
 
Source name brain, Right Frontal Lobe
Organism Homo sapiens
Characteristics tissue: brain, Right Frontal Lobe
histology: GBM
tumor number (as appears in figure 3): 2015
age: 78
gender: MALE
grade: 4
living: ALIVE
survival time: 396
survival cluster: SC2
hc_74_samples: HC2B
hc_85_samples: HC2B
array: 133B
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description GBM
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date Sep 11, 2014
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL97
Series (1)
GSE4412 freij-affy-human-91666
Relations
Reanalyzed by GSE61335

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 4250.9243 P 0.001102
AFFX-BioB-M_at 9729.251 P 0.000110
AFFX-BioB-3_at 4377.935 P 0.001248
AFFX-BioC-5_at 13422.2295 P 0.000060
AFFX-BioC-3_at 9738.722 P 0.000095
AFFX-BioDn-5_at 10361.108 P 0.000070
AFFX-BioDn-3_at 66921.1 P 0.000070
AFFX-CreX-5_at 129319.6 P 0.000044
AFFX-CreX-3_at 188332.16 P 0.000044
AFFX-DapX-5_at 15.689181 A 0.712257
AFFX-DapX-M_at 311.3128 A 0.396920
AFFX-DapX-3_at 327.4715 A 0.868639
AFFX-LysX-5_at 44.50432 A 0.672921
AFFX-LysX-M_at 368.27222 A 0.544587
AFFX-LysX-3_at 241.57721 A 0.327079
AFFX-PheX-5_at 24.80423 A 0.927300
AFFX-PheX-M_at 49.004505 A 0.963431
AFFX-PheX-3_at 249.51729 A 0.559354
AFFX-ThrX-5_at 74.37318 A 0.852061
AFFX-ThrX-M_at 80.20534 A 0.659339

Total number of rows: 22645

Table truncated, full table size 685 Kbytes.




Supplementary file Size Download File type/resource
GSM99445.CEL.gz 3.2 Mb (ftp)(http) CEL

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