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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Parietal: Extract66_le2
Sample type
RNA
Source name
brain, Right Frontal Parietal
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Parietal
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3473.1436
P
0.002556
AFFX-BioB-M_at
6786.7656
P
0.000297
AFFX-BioB-3_at
3539.055
P
0.002867
AFFX-BioC-5_at
8710.545
P
0.000070
AFFX-BioC-3_at
8028.5137
P
0.000110
AFFX-BioDn-5_at
8179.514
P
0.000095
AFFX-BioDn-3_at
48079.953
P
0.000258
AFFX-CreX-5_at
86072.984
P
0.000044
AFFX-CreX-3_at
127241.02
P
0.000044
AFFX-DapX-5_at
310.5723
A
0.354453
AFFX-DapX-M_at
390.5527
A
0.175328
AFFX-DapX-3_at
74.29496
A
0.960339
AFFX-LysX-5_at
53.802284
A
0.814869
AFFX-LysX-M_at
92.71233
A
0.659339
AFFX-LysX-3_at
36.089203
A
0.659339
AFFX-PheX-5_at
40.61648
A
0.945787
AFFX-PheX-M_at
57.93462
A
0.860518
AFFX-PheX-3_at
251.34935
A
0.659339
AFFX-ThrX-5_at
79.97686
A
0.883887
AFFX-ThrX-M_at
385.3292
A
0.500000
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99449.CEL.gz
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