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Sample GSM99452 Query DataSets for GSM99452
Status Public on Mar 08, 2006
Title brain, Right Frontal Temporal: Extract68_le1
Sample type RNA
 
Source name brain, Right Frontal Temporal
Organism Homo sapiens
Characteristics tissue: brain, Right Frontal Temporal
histology: GBM
tumor number (as appears in figure 3): 706
age: 54
gender: MALE
grade: 4
living: DECEASED
survival time: 506
survival cluster: SC1
hc_74_samples: HC1B
hc_85_samples: HC1B
array: 133A
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description GBM
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date Sep 11, 2014
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL96
Series (1)
GSE4412 freij-affy-human-91666
Relations
Reanalyzed by GSM326703
Reanalyzed by GSE61335

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2189.738 P 0.007620
AFFX-BioB-M_at 2052.5405 P 0.001410
AFFX-BioB-3_at 1170.099 P 0.042962
AFFX-BioC-5_at 4891.0747 P 0.000662
AFFX-BioC-3_at 3983.5356 P 0.000147
AFFX-BioDn-5_at 3841.9067 P 0.000169
AFFX-BioDn-3_at 33390.57 P 0.000127
AFFX-CreX-5_at 35055.242 P 0.000044
AFFX-CreX-3_at 53018.54 P 0.000044
AFFX-DapX-5_at 55.012897 A 0.396920
AFFX-DapX-M_at 198.23083 A 0.396920
AFFX-DapX-3_at 38.860626 A 0.904333
AFFX-LysX-5_at 36.14925 A 0.631562
AFFX-LysX-M_at 497.291 A 0.440646
AFFX-LysX-3_at 109.98552 A 0.425962
AFFX-PheX-5_at 21.208542 A 0.921998
AFFX-PheX-M_at 24.821964 A 0.963431
AFFX-PheX-3_at 104.71347 A 0.783476
AFFX-ThrX-5_at 63.594418 A 0.749204
AFFX-ThrX-M_at 210.69682 A 0.455413

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.




Supplementary file Size Download File type/resource
GSM99452.CEL.gz 3.5 Mb (ftp)(http) CEL

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