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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Temporal: Extract69_le2
Sample type
RNA
Source name
brain, Right Frontal Temporal
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Temporal
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3612.62
P
0.004998
AFFX-BioB-M_at
5466.2573
P
0.005565
AFFX-BioB-3_at
2484.761
A
0.067678
AFFX-BioC-5_at
9873.488
P
0.000258
AFFX-BioC-3_at
8552.453
P
0.000225
AFFX-BioDn-5_at
7589.2803
P
0.000754
AFFX-BioDn-3_at
66402.76
P
0.000340
AFFX-CreX-5_at
75287.87
P
0.000044
AFFX-CreX-3_at
128695.29
P
0.000044
AFFX-DapX-5_at
252.3918
A
0.514890
AFFX-DapX-M_at
608.5666
A
0.500000
AFFX-DapX-3_at
535.6083
A
0.794268
AFFX-LysX-5_at
554.8772
A
0.300606
AFFX-LysX-M_at
1047.8563
A
0.411380
AFFX-LysX-3_at
824.52325
A
0.116113
AFFX-PheX-5_at
38.07157
A
0.984817
AFFX-PheX-M_at
94.64709
A
0.949771
AFFX-PheX-3_at
311.38678
A
0.794268
AFFX-ThrX-5_at
161.37364
A
0.783476
AFFX-ThrX-M_at
799.8398
A
0.396920
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99455.CEL.gz
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