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Status
Public on Mar 08, 2006
Title
brain, Right Parietal Lobe: Extract71_le1
Sample type
RNA
Source name
brain, Right Parietal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Parietal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
2683.149
P
0.003212
AFFX-BioB-M_at
5870.0864
P
0.000147
AFFX-BioB-3_at
1690.2496
P
0.000754
AFFX-BioC-5_at
6165.4224
P
0.000297
AFFX-BioC-3_at
6065.6333
P
0.000052
AFFX-BioDn-5_at
5307.643
P
0.000070
AFFX-BioDn-3_at
35667.82
P
0.000081
AFFX-CreX-5_at
53891.66
P
0.000044
AFFX-CreX-3_at
80664.02
P
0.000044
AFFX-DapX-5_at
31.179497
A
0.631562
AFFX-DapX-M_at
334.2543
A
0.078002
AFFX-DapX-3_at
25.927567
A
0.969024
AFFX-LysX-5_at
142.28664
A
0.699394
AFFX-LysX-M_at
149.58284
A
0.514890
AFFX-LysX-3_at
33.94676
A
0.772364
AFFX-PheX-5_at
9.141958
A
0.966323
AFFX-PheX-M_at
58.301243
A
0.603080
AFFX-PheX-3_at
67.273415
A
0.804734
AFFX-ThrX-5_at
20.943068
A
0.910522
AFFX-ThrX-M_at
53.048466
A
0.760937
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99458.CEL.gz
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