NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM99459 Query DataSets for GSM99459
Status Public on Mar 08, 2006
Title brain, Right Parietal Lobe: Extract71_le2
Sample type RNA
 
Source name brain, Right Parietal Lobe
Organism Homo sapiens
Characteristics tissue: brain, Right Parietal Lobe
histology: OLIGO
tumor number (as appears in figure 3): 975
age: 20
gender: FEMALE
grade: 3
living: DECEASED
survival time: 173
survival cluster: SC2
hc_74_samples: HC1B
hc_85_samples: HC2A
array: 133B
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description GBM
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date May 22, 2013
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL97
Series (1)
GSE4412 freij-affy-human-91666

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 4699.8115 P 0.002275
AFFX-BioB-M_at 11510.608 P 0.000147
AFFX-BioB-3_at 4754.1777 P 0.003212
AFFX-BioC-5_at 13503.483 P 0.000127
AFFX-BioC-3_at 11668.768 P 0.000095
AFFX-BioDn-5_at 10336.836 P 0.000070
AFFX-BioDn-3_at 76803.945 P 0.000070
AFFX-CreX-5_at 129142.625 P 0.000044
AFFX-CreX-3_at 209959.55 P 0.000044
AFFX-DapX-5_at 625.96796 A 0.078002
AFFX-DapX-M_at 426.18793 A 0.368438
AFFX-DapX-3_at 480.4304 A 0.783476
AFFX-LysX-5_at 497.83685 A 0.287743
AFFX-LysX-M_at 90.09421 A 0.883887
AFFX-LysX-3_at 184.54662 A 0.440646
AFFX-PheX-5_at 69.633484 A 0.897835
AFFX-PheX-M_at 95.89885 A 0.897835
AFFX-PheX-3_at 206.91037 A 0.834139
AFFX-ThrX-5_at 64.71023 A 0.843268
AFFX-ThrX-M_at 151.11014 A 0.794268

Total number of rows: 22645

Table truncated, full table size 686 Kbytes.




Supplementary file Size Download File type/resource
GSM99459.CEL.gz 3.2 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap