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Status
Public on Mar 08, 2006
Title
brain, Right Parietal Occipital: Extract75_le1
Sample type
RNA
Source name
brain, Right Parietal Occipital
Organism
Homo sapiens Characteristics
tissue: brain, Right Parietal Occipital
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326680 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1194.4327
P
0.004484
AFFX-BioB-M_at
2618.7004
P
0.000972
AFFX-BioB-3_at
1249.5958
P
0.011384
AFFX-BioC-5_at
4117.68
P
0.000258
AFFX-BioC-3_at
3089.523
P
0.000127
AFFX-BioDn-5_at
3233.035
P
0.000195
AFFX-BioDn-3_at
20657.764
P
0.000297
AFFX-CreX-5_at
29042.543
P
0.000044
AFFX-CreX-3_at
41061.797
P
0.000044
AFFX-DapX-5_at
188.02014
A
0.250796
AFFX-DapX-M_at
206.1262
A
0.340661
AFFX-DapX-3_at
30.449404
A
0.883887
AFFX-LysX-5_at
96.06759
A
0.368438
AFFX-LysX-M_at
69.61311
A
0.603080
AFFX-LysX-3_at
81.55027
A
0.382599
AFFX-PheX-5_at
18.322964
A
0.949771
AFFX-PheX-M_at
37.733025
A
0.904333
AFFX-PheX-3_at
71.123344
A
0.843268
AFFX-ThrX-5_at
81.2356
A
0.737173
AFFX-ThrX-M_at
105.84187
A
0.514890
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99466.CEL.gz
3.5 Mb
(ftp) (http) CEL
