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Sample GSM99469

Query DataSets for GSM99469

Status

Public on Mar 08, 2006

Title

brain, Right Temporal Lobe: Extract76_le2

Sample type

RNA

Source name

brain, Right Temporal Lobe

Organism

Homo sapiens

Characteristics

tissue: brain, Right Temporal Lobe
histology: MIXED
tumor number (as appears in figure 3): 886
age: 30
gender: MALE
grade: 3
living: DECEASED
survival time: 664
survival cluster: SC1
hc_74_samples: HC1A
hc_85_samples: HC1A
array: 133B

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

May 22, 2013

Contact name

Winnie Liang

E-mail(s)

wliang@tgen.org

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL97

Series (1)

GSE4412

freij-affy-human-91666

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	6274.254	P	0.000581
AFFX-BioB-M_at	14103.437	P	0.000052
AFFX-BioB-3_at	5427.027	P	0.000258
AFFX-BioC-5_at	15451.392	P	0.000070
AFFX-BioC-3_at	15832.459	P	0.000070
AFFX-BioDn-5_at	16191.556	P	0.000044
AFFX-BioDn-3_at	82110.29	P	0.000060
AFFX-CreX-5_at	125179.57	P	0.000044
AFFX-CreX-3_at	179967.56	P	0.000044
AFFX-DapX-5_at	452.83905	A	0.089478
AFFX-DapX-M_at	647.49	A	0.131361
AFFX-DapX-3_at	65.3725	A	0.963431
AFFX-LysX-5_at	405.44955	A	0.287743
AFFX-LysX-M_at	188.2079	A	0.749204
AFFX-LysX-3_at	253.63042	A	0.250796
AFFX-PheX-5_at	36.691013	A	0.897835
AFFX-PheX-M_at	63.607067	A	0.910522
AFFX-PheX-3_at	153.54535	A	0.749204
AFFX-ThrX-5_at	123.86671	A	0.916408
AFFX-ThrX-M_at	314.94168	A	0.514890

Total number of rows: 22645

Table truncated, full table size 686 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99469.CEL.gz	3.2 Mb	(ftp)(http)	CEL