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Sample GSM999286 Query DataSets for GSM999286
Status Public on Sep 07, 2012
Title HudsonAlpha_Genotype_HepG2
Sample type genomic
 
Source name HepG2
Organism Homo sapiens
Characteristics lab: HudsonAlpha
lab description: Myers - Hudson Alpha Institute for Biotechnology
datatype: Genotype
datatype description: Genotype CNV and SNP
cell: HepG2
cell organism: human
cell description: hepatocellular carcinoma
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labversion: Illumina 1MDuo
obtainedby: HudsonAlpha
obtainedby description: Myers - Hudson Alpha Institute for Biotechnology
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HepG2_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibGenotype
Label Unknown
Label protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibGenotype
 
Hybridization protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibGenotype
Scan protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibGenotype
Description http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibGenotype
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibGenotype
 
Submission date Sep 07, 2012
Last update date Apr 23, 2013
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL6984
Series (1)
GSE40698 Genotype (CNV and SNP) by Illumina 1MDuo and CBS from ENCODE/HudsonAlpha

Supplementary file Size Download File type/resource
GSM999286_hg19_wgEncodeHaibGenotypeHepg2RegionsRep1.bedLogR.gz 7.5 Kb (ftp)(http) BEDLOGR
Processed data provided as supplementary file
Processed data are available on Series record

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