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Sample GSM999333 Query DataSets for GSM999333
Status Public on Sep 07, 2012
Title HudsonAlpha_Genotype_MCF-7
Sample type genomic
Source name MCF-7
Organism Homo sapiens
Characteristics lab: HudsonAlpha
lab description: Myers - Hudson Alpha Institute for Biotechnology
datatype: Genotype
datatype description: Genotype CNV and SNP
cell: MCF-7
cell organism: human
cell description: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labversion: Illumina 1MDuo
obtainedby: UW
obtainedby description: Stamatoyannopoulous - University of Washington
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol
Label Unknown
Label protocol
Hybridization protocol
Scan protocol
Data processing
Submission date Sep 07, 2012
Last update date Apr 23, 2013
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL6984
Series (1)
GSE40698 Genotype (CNV and SNP) by Illumina 1MDuo and CBS from ENCODE/HudsonAlpha

Supplementary file Size Download File type/resource
GSM999333_hg19_wgEncodeHaibGenotypeMcf7RegionsRep1.bedLogR.gz 8.8 Kb (ftp)(http) BEDLOGR
GSM999333_hg19_wgEncodeHaibGenotypeMcf7RegionsRep2.bedLogR.gz 9.0 Kb (ftp)(http) BEDLOGR
Processed data provided as supplementary file
Processed data are available on Series record

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