U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Slc66a3 solute carrier family 66 member 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298906, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Slc66a3provided by RGD
    Official Full Name
    solute carrier family 66 member 3provided by RGD
    Primary source
    RGD:1306818
    See related
    EnsemblRapid:ENSRNOG00000005126 AllianceGenome:RGD:1306818
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Pqlc3; RGD1306818
    Summary
    Predicted to be located in membrane. Orthologous to human SLC66A3 (solute carrier family 66 member 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Lung (RPKM 110.8), Spleen (RPKM 71.5) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Slc66a3 in Genome Data Viewer
    Location:
    6q16
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (45503541..45515293, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (39774801..39786554, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (42290678..42302451, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene growth regulating estrogen receptor binding 1 Neighboring gene E2F transcription factor 6 Neighboring gene Rho-associated coiled-coil containing protein kinase 2 Neighboring gene uncharacterized LOC134479346 Neighboring gene ciliary microtubule inner protein 5 Neighboring gene potassium voltage-gated channel modifier subfamily F member 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    solute carrier family 66 member 3
    Names
    PQ loop repeat containing 3
    PQ-loop repeat-containing protein 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034952.1 → NP_001030124.1  solute carrier family 66 member 3 precursor

      See identical proteins and their annotated locations for NP_001030124.1

      Status: PROVISIONAL

      Source sequence(s)
      BC081879, CB556892, CK477351
      UniProtKB/TrEMBL
      A6HAT8, G3V6N5
      Related
      ENSRNOP00000007071.6, ENSRNOT00000007071.8
      Conserved Domains (1) summary
      pfam04193
      Location:5 → 53
      PQ-loop; PQ loop repeat

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      45503541..45515293 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039111949.1 → XP_038967877.1  solute carrier family 66 member 3 isoform X3

      UniProtKB/TrEMBL
      A0A8I5YCE9
      Conserved Domains (1) summary
      pfam04193
      Location:5 → 53
      PQ-loop; PQ loop repeat

    2. XM_008764587.4 → XP_008762809.1  solute carrier family 66 member 3 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A368
      Related
      ENSRNOP00000085412.1, ENSRNOT00000101737.2
      Conserved Domains (1) summary
      pfam04193
      Location:5 → 53
      PQ-loop; PQ loop repeat

    3. XM_039111947.2 → XP_038967875.1  solute carrier family 66 member 3 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZZ26
      Related
      ENSRNOP00000084445.1, ENSRNOT00000109304.2
      Conserved Domains (1) summary
      pfam04193
      Location:5 → 53
      PQ-loop; PQ loop repeat
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools