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    Txlnb taxilin beta [ Rattus norvegicus (Norway rat) ]

    Gene ID: 308622, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Txlnbprovided by RGD
    Official Full Name
    taxilin betaprovided by RGD
    Primary source
    RGD:1307979
    See related
    Ensembl:ENSRNOG00000060021 AllianceGenome:RGD:1307979
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307979
    Summary
    Predicted to enable syntaxin binding activity. Predicted to be located in cytoplasm. Orthologous to human TXLNB (taxilin beta). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Muscle (RPKM 821.7) and Heart (RPKM 710.3) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Txlnb in Genome Data Viewer
    Location:
    1p12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (14224647..14269837)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (12404845..12449977)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (12915781..12961680)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134484952 Neighboring gene uncharacterized LOC134484954 Neighboring gene uncharacterized LOC134484953 Neighboring gene developmental pluripotency-associated protein 5A-like Neighboring gene heat shock protein 90 alpha family class A member 1, pseudogene 2 Neighboring gene hdc homolog, cell cycle regulator

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    beta-taxilin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001135859.1 → NP_001129331.1  beta-taxilin

      See identical proteins and their annotated locations for NP_001129331.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473994
      UniProtKB/TrEMBL
      A0A0G2K2T1, A6JP90
      Related
      ENSRNOP00000072363.2, ENSRNOT00000089066.2
      Conserved Domains (1) summary
      pfam09728
      Location:147 → 459
      Taxilin; Myosin-like coiled-coil protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      14224647..14269837
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006227657.4 → XP_006227719.1  beta-taxilin isoform X1

      UniProtKB/TrEMBL
      A0A0G2K2T1
      Conserved Domains (2) summary
      PRK07764
      Location:527 → 677
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam09728
      Location:146 → 453
      Taxilin; Myosin-like coiled-coil protein

    2. XM_039112431.2 → XP_038968359.1  beta-taxilin isoform X1

      Conserved Domains (2) summary
      PRK07764
      Location:527 → 677
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam09728
      Location:146 → 453
      Taxilin; Myosin-like coiled-coil protein
    Nucleotide Protein Strain
    Heading Accession and Version

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