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    Ccdc202 coiled-coil domain containing 202 [ Mus musculus (house mouse) ]

    Gene ID: 66732, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Ccdc202provided by MGI
    Official Full Name
    coiled-coil domain containing 202provided by MGI
    Primary source
    MGI:MGI:1913982
    See related
    Ensembl:ENSMUSG00000034689 AllianceGenome:MGI:1913982
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Spertl; 4921530L21Rik
    Expression
    Restricted expression toward testis adult (RPKM 8.6) See more
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    Genomic context

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    See Ccdc202 in Genome Data Viewer
    Location:
    14 E2.1; 14 46.92 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (96114791..96120216)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (95881254..95882780)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene hydroxyacid oxidase 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_37403 Neighboring gene 3-phosphoglycerate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_37404 Neighboring gene STARR-seq mESC enhancer starr_37406 Neighboring gene AFG3(ATPase family gene 3)-like 1 pseudogene Neighboring gene methylmalonic aciduria cblC type, with homocystinuria pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC66732
    Names
    spermatid associated like
    testis highly expressed protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358241.1 → NP_001345170.1  uncharacterized protein LOC66732

      Status: VALIDATED

      Source sequence(s)
      BC049573
      Consensus CDS
      CCDS27307.1
      UniProtKB/TrEMBL
      Q9CQ47
      Related
      ENSMUSP00000153934.2, ENSMUST00000228913.2
      Conserved Domains (1) summary
      TIGR02169
      Location:83 → 245
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    2. NM_025733.3 → NP_080009.1  uncharacterized protein LOC66732

      See identical proteins and their annotated locations for NP_080009.1

      Status: VALIDATED

      Source sequence(s)
      AK014987, BC049573
      Consensus CDS
      CCDS27307.1
      UniProtKB/TrEMBL
      Q9CQ47
      Related
      ENSMUSP00000044028.2, ENSMUST00000045892.3
      Conserved Domains (1) summary
      TIGR02169
      Location:83 → 245
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      96114791..96120216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158818.1 → XP_036014711.1  uncharacterized protein LOC66732 isoform X1

      UniProtKB/TrEMBL
      Q9CQ47
      Conserved Domains (1) summary
      TIGR02169
      Location:83 → 245
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    2. XM_017316130.3 → XP_017171619.1  uncharacterized protein LOC66732 isoform X1

      UniProtKB/TrEMBL
      Q9CQ47
      Conserved Domains (1) summary
      TIGR02169
      Location:83 → 245
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    Nucleotide Protein Strain
    Heading Accession and Version

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