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    Tmem242 transmembrane protein 242 [ Mus musculus (house mouse) ]

    Gene ID: 70544, updated on 5-Mar-2024

    Summary

    Official Symbol
    Tmem242provided by MGI
    Official Full Name
    transmembrane protein 242provided by MGI
    Primary source
    MGI:MGI:1917794
    See related
    Ensembl:ENSMUSG00000004945 AllianceGenome:MGI:1917794
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110008A10Rik; 2310046K16Rik; 5730437N04Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM242 (transmembrane protein 242). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 19.1), placenta adult (RPKM 12.2) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Tmem242 in Genome Data Viewer
    Location:
    17 A1; 17 3.16 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (5461139..5490535, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (5410864..5440260, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene AT-rich interaction domain 1B Neighboring gene STARR-seq mESC enhancer starr_41683 Neighboring gene tubulin, alpha 1B pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E10929 Neighboring gene STARR-seq mESC enhancer starr_41685 Neighboring gene predicted gene, 34854 Neighboring gene STARR-seq mESC enhancer starr_41691 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:5295725-5295926 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:5296016-5296125 Neighboring gene STARR-positive B cell enhancer mm9_chr17:5303477-5303778 Neighboring gene STARR-positive B cell enhancer mm9_chr17:5429429-5429729 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:5440198-5440381 Neighboring gene predicted gene 29050 Neighboring gene lactate dehydrogenase A-like 6B Neighboring gene STARR-positive B cell enhancer ABC_E3179 Neighboring gene predicted gene, 52310 Neighboring gene non-SMC condensin II complex, subunit H2 pseudogene Neighboring gene zinc finger, DHHC domain containing 14

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in mitochondrial proton-transporting ATP synthase complex assembly ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial inner membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    transmembrane protein 242
    Names
    UPF0463 transmembrane protein C6orf35 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027457.4NP_081733.3  transmembrane protein 242

      See identical proteins and their annotated locations for NP_081733.3

      Status: VALIDATED

      Source sequence(s)
      AK043276, AW555272, BB817862, BY013779
      Consensus CDS
      CCDS49930.1
      UniProtKB/Swiss-Prot
      Q8C2T2, Q8CEX9, Q8VCR3, Q9CYJ2, Q9D1H4
      Related
      ENSMUSP00000005053.8, ENSMUST00000005053.14
      Conserved Domains (1) summary
      pfam07096
      Location:10123
      DUF1358; Protein of unknown function (DUF1358)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      5461139..5490535 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)