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    TCL6 T cell leukemia/lymphoma 6 [ Homo sapiens (human) ]

    Gene ID: 27004, updated on 17-Sep-2024

    Summary

    Official Symbol
    TCL6provided by HGNC
    Official Full Name
    T cell leukemia/lymphoma 6provided by HGNC
    Primary source
    HGNC:HGNC:13463
    See related
    MIM:604412; AllianceGenome:HGNC:13463
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TNG1; TNG2
    Expression
    Biased expression in kidney (RPKM 2.4), placenta (RPKM 1.4) and 5 other tissues See more
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    Genomic context

    See TCL6 in Genome Data Viewer
    Location:
    14q32.13
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (95652097..95673452)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (89883670..89905022)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (96118434..96139789)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:96042156-96043078 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:96043079-96044000 Neighboring gene long intergenic non-protein coding RNA 2318 Neighboring gene uncharacterized LOC105370643 Neighboring gene Sharpr-MPRA regulatory region 452 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8966 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8967 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8968 Neighboring gene uncharacterized LOC124903372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:96131757-96132404 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:96133051-96133697 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8969 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8970 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8971 Neighboring gene TCL1 family AKT coactivator B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8972 Neighboring gene uncharacterized LOC124903373

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    Associated conditions

    Description Tests
    Leukemia/lymphoma, T-cell
    MedGen: CN375895 GeneReviews: Not available
    not available

    EBI GWAS Catalog

    Description
    A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Potential readthrough

    Included gene: TCL1B

    Other Names

    • T cell leukemia/lymphoma 6 (non-protein coding)
    • TCL1-neighboring gene 1
    • TCL1-neighboring gene 2

    Clone Names

    • FLJ13652

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028288.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL133467
    2. NR_152604.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL133467

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      95652097..95673452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      89883670..89905022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_012468.4: Suppressed sequence

      Description
      NM_012468.4: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    2. NM_014418.3: Suppressed sequence

      Description
      NM_014418.3: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    3. NM_020550.3: Suppressed sequence

      Description
      NM_020550.3: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    4. NM_020552.3: Suppressed sequence

      Description
      NM_020552.3: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    5. NM_020553.3: Suppressed sequence

      Description
      NM_020553.3: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    6. NM_020554.3: Suppressed sequence

      Description
      NM_020554.3: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.