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    LOC101927066 uncharacterized LOC101927066 [ Homo sapiens (human) ]

    Gene ID: 101927066, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC101927066
    Gene description
    uncharacterized LOC101927066
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LOC101927066 in Genome Data Viewer
    Location:
    8q22.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (96951864..97446497, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (98077597..98572171, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (97964092..98458725, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900253 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:97563257-97563757 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:97592183-97592688 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:97601754-97602254 Neighboring gene Sharpr-MPRA regulatory region 4348 Neighboring gene syndecan 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19389 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:97731641-97732141 Neighboring gene uncharacterized LOC124901985 Neighboring gene carboxypeptidase Q Neighboring gene uncharacterized LOC105375655 Neighboring gene Sharpr-MPRA regulatory region 10694 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:98218533-98219332 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:98217733-98218532 Neighboring gene Sharpr-MPRA regulatory region 2413 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:98226988-98227220 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:98244253-98244860 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:98289193-98289694 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:98331415-98331933 Neighboring gene Sharpr-MPRA regulatory region 7239 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:98346916-98347522 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:98347523-98348128 Neighboring gene TSPY like 5 Neighboring gene small nucleolar RNA, C/D box 3H Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:98504615-98505171 Neighboring gene uncharacterized LOC105375657 Neighboring gene ribosomal protein S2 pseudogene 33

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    A genome-wide association study of sleep habits and insomnia.
    EBI GWAS Catalog
    Genome-wide association study of antipsychotic-induced QTc interval prolongation.
    EBI GWAS Catalog
    Genome-wide association study of migraine implicates a common susceptibility variant on 8q22.1.
    EBI GWAS Catalog
    TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125390.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK091342, AP003112

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      96951864..97446497 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      98077597..98572171 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)