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    SEPTIN7P9 septin 7 pseudogene 9 [ Homo sapiens (human) ]

    Gene ID: 285961, updated on 17-Jun-2024

    Summary

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    Official Symbol
    SEPTIN7P9provided by HGNC
    Official Full Name
    septin 7 pseudogene 9provided by HGNC
    Primary source
    HGNC:HGNC:30810
    See related
    Ensembl:ENSG00000291056 AllianceGenome:HGNC:30810
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CDC10L; SEPT7L; SEPT7P9; bA291L22.2
    Expression
    Biased expression in testis (RPKM 10.7), prostate (RPKM 1.0) and 10 other tissues See more
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    Genomic context

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    See SEPTIN7P9 in Genome Data Viewer
    Location:
    10p11.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (38383023..38402927, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (38427018..38446919, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (38671951..38691855, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene PLD5 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:38644965-38645522 Neighboring gene hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:38690995-38691866 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:38691867-38692738 Neighboring gene uncharacterized LOC101929540 Neighboring gene RNA, U6 small nuclear 1118, pseudogene Neighboring gene long intergenic non-protein coding RNA 999

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • CDC10 cell division cycle 10 homolog-like
    • CDC10-like
    • septin 7-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027269.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL133216
      Related
      ENST00000475691.6

    2. NR_148868.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL133216

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      38383023..38402927 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_021160000.1 Reference GRCh38.p14 PATCHES

      Range
      19851..39755 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      38427018..38446919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_004808.3: Suppressed sequence

      Description
      NG_004808.3: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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