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    LINC00354 long intergenic non-protein coding RNA 354 [ Homo sapiens (human) ]

    Gene ID: 101928616, updated on 17-Jun-2024

    Summary

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    Official Symbol
    LINC00354provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 354provided by HGNC
    Primary source
    HGNC:HGNC:42672
    See related
    Ensembl:ENSG00000226903 AllianceGenome:HGNC:42672
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.6) See more
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    Genomic context

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    See LINC00354 in Genome Data Viewer
    Location:
    13q34
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (111893378..111901176)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (111136917..111144703)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (112547692..112555490)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724489 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:112322811-112323586 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112328767-112329267 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112331801-112332368 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112344803-112345788 Neighboring gene uncharacterized LOC102724510 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112506195-112507184 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112507185-112508174 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112513428-112514170 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:112514171-112514912 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:112547335-112548032 Neighboring gene SOX1 overlapping transcript Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112666027-112666570 Neighboring gene uncharacterized LOC105378193 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112682419-112682919 Neighboring gene small nucleolar RNA SNORD44

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046992.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' terminal exon and contains an alternate 3' exon structure, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AL136302, BX117816, DB457517
      Related
      ENST00000655663.1

    2. NR_120401.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL136302, HY022991

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      111893378..111901176
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      111136917..111144703
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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