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    ZDHHC6 zinc finger DHHC-type palmitoyltransferase 6 [ Homo sapiens (human) ]

    Gene ID: 64429, updated on 3-Nov-2024

    Summary

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    Official Symbol
    ZDHHC6provided by HGNC
    Official Full Name
    zinc finger DHHC-type palmitoyltransferase 6provided by HGNC
    Primary source
    HGNC:HGNC:19160
    See related
    Ensembl:ENSG00000023041 MIM:618715; AllianceGenome:HGNC:19160
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DHHC6; DHHC-6; ZNF376
    Summary
    Enables palmitoyltransferase activity and protein-cysteine S-stearoyltransferase activity. Involved in positive regulation of mitochondrial fusion; protein palmitoylation; and protein stearoylation. Located in endoplasmic reticulum. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in small intestine (RPKM 19.0), duodenum (RPKM 17.1) and 25 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See ZDHHC6 in Genome Data Viewer
    Location:
    10q25.2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (112424412..112447572, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (113315089..113338239, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (114184170..114207330, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 2531 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2832 Neighboring gene microRNA 6715b Neighboring gene microRNA 6715a Neighboring gene tectorin beta Neighboring gene guanylate cyclase 2G, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:114135606-114136106 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:114136107-114136607 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2833 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2834 Neighboring gene acyl-CoA synthetase long chain family member 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4065 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4066 Neighboring gene Sharpr-MPRA regulatory region 13267 Neighboring gene vesicle transport through interaction with t-SNAREs 1A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4067 Neighboring gene uncharacterized LOC124902503 Neighboring gene microRNA 4295 Neighboring gene Sharpr-MPRA regulatory region 921 Neighboring gene Sharpr-MPRA regulatory region 3692 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:114492107-114492608 Neighboring gene Sharpr-MPRA regulatory region 7283 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:114563987-114564486 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:114570610-114571310 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:114571311-114572009 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:114572010-114572709 Neighboring gene uncharacterized LOC103344931

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Toll-like receptor mediated inflammation requires FASN-dependent MYD88 palmitoylation. Kim YC, et al. Nat Chem Biol, 2019 Sep. PMID 31427815
    2. Molecular Mechanisms by Which Selenoprotein K Regulates Immunity and Cancer. Marciel MP, et al. Biol Trace Elem Res, 2019 Nov. PMID 31187393, Free PMC Article
    3. Proteome scale characterization of human S-acylated proteins in lipid raft-enriched and non-raft membranes. Yang W, et al. Mol Cell Proteomics, 2010 Jan. PMID 19801377, Free PMC Article
    4. RING finger palmitoylation of the endoplasmic reticulum Gp78 E3 ubiquitin ligase. Fairbank M, et al. FEBS Lett, 2012 Jul 30. PMID 22728137
    5. Endoplasmic reticulum localization of DHHC palmitoyltransferases mediated by lysine-based sorting signals. Gorleku OA, et al. J Biol Chem, 2011 Nov 11. PMID 21926431, Free PMC Article

    See all (34) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. human ZDHHC6, which modifies key proteins of the endoplasmic reticulum, is controlled by an upstream palmitoyltransferase, ZDHHC16, revealing the first palmitoylation cascade.
      Title: Identification and dynamics of the human ZDHHC16-ZDHHC6 palmitoylation cascade.
    2. DHHC6 knockdown using shRNA in stably transfected cell lines led to decreased expression of the IP3R and impaired IP3R-dependent Ca(2+) flux.
      Title: Stable expression and function of the inositol 1,4,5-triphosphate receptor requires palmitoylation by a DHHC6/selenoprotein K complex.
    3. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
      Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
    4. Data show that palmitoyl acyltransferases DHHC5, DHHC6, and DHHC8 appear to be S-acylated on three cysteine residues within a novel CCX(7-13)C(S/T) motif downstream of a conserved Asp-His-His-Cys cysteine-rich domain.
      Title: Proteome scale characterization of human S-acylated proteins in lipid raft-enriched and non-raft membranes.
    Submit: New GeneRIF Correction

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide meta-analysis identifies new susceptibility loci for migraine.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ21952, FLJ30429

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables palmitoyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein-cysteine S-palmitoyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein-cysteine S-stearoyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of mitochondrial fusion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein palmitoylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein stearoylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein targeting to membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    palmitoyltransferase ZDHHC6
    Names
    stearoyltransferase ZDHHC6
    transmembrane protein H4
    zinc finger DHHC domain-containing protein 6
    zinc finger DHHC-type containing 6
    zinc finger protein 376
    NP_001290063.1
    NP_001338011.1
    NP_001338012.1
    NP_001338013.1
    NP_001338014.1
    NP_001338015.1
    NP_001350473.1
    NP_001397995.1
    NP_071939.1
    XP_006718012.1
    XP_011538393.1
    XP_011538395.1
    XP_011538397.1
    XP_016872051.1
    XP_016872052.1
    XP_016872053.1
    XP_016872055.1
    XP_016872056.1
    XP_016872057.1
    XP_016872058.1
    XP_047281609.1
    XP_047281610.1
    XP_047281611.1
    XP_047281613.1
    XP_047281614.1
    XP_047281615.1
    XP_047281616.1
    XP_047281617.1
    XP_054222573.1
    XP_054222574.1
    XP_054222575.1
    XP_054222576.1
    XP_054222577.1
    XP_054222578.1
    XP_054222579.1
    XP_054222580.1
    XP_054222581.1
    XP_054222582.1
    XP_054222583.1
    XP_054222584.1
    XP_054222585.1
    XP_054222586.1
    XP_054222587.1
    XP_054222588.1
    XP_054222589.1
    XP_054222590.1
    XP_054222591.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001303134.2 → NP_001290063.1  palmitoyltransferase ZDHHC6 isoform 2

      See identical proteins and their annotated locations for NP_001290063.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AI695150, BC007213, BX647270, DA745043
      Consensus CDS
      CCDS76335.1
      UniProtKB/TrEMBL
      A0A804HJ80
      Related
      ENSP00000358412.3, ENST00000369404.3
      Conserved Domains (1) summary
      pfam01529
      Location:91 → 237
      zf-DHHC; DHHC palmitoyltransferase

    2. NM_001351082.3 → NP_001338011.1  palmitoyltransferase ZDHHC6 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 3, 4 and 5 encode the same protein (isoform 1).
      Source sequence(s)
      AC022018, AI695150, AK025605, BX647270, DA745043, DC354896
      Consensus CDS
      CCDS7574.1
      UniProtKB/Swiss-Prot
      D3DRB6, Q53G45, Q96IV7, Q9H605, Q9H6R6
      UniProtKB/TrEMBL
      A0A804HJ80
      Conserved Domains (2) summary
      pfam01529
      Location:95 → 241
      DHHC; DHHC palmitoyltransferase
      cl17036
      Location:317 → 394
      SH3; Src Homology 3 domain superfamily

    3. NM_001351083.2 → NP_001338012.1  palmitoyltransferase ZDHHC6 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1, 3, 4 and 5 encode the same protein (isoform 1).
      Source sequence(s)
      AI695150, AK025605, BX647270, DA936028
      Consensus CDS
      CCDS7574.1
      UniProtKB/Swiss-Prot
      D3DRB6, Q53G45, Q96IV7, Q9H605, Q9H6R6
      UniProtKB/TrEMBL
      A0A804HJ80
      Related
      ENSP00000507661.1, ENST00000683895.1
      Conserved Domains (2) summary
      pfam01529
      Location:95 → 241
      DHHC; DHHC palmitoyltransferase
      cl17036
      Location:317 → 394
      SH3; Src Homology 3 domain superfamily

    4. NM_001351084.2 → NP_001338013.1  palmitoyltransferase ZDHHC6 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1, 3, 4 and 5 encode the same protein (isoform 1).
      Source sequence(s)
      AI695150, AK025605, BX647270, DA621943, DA936028
      Consensus CDS
      CCDS7574.1
      UniProtKB/Swiss-Prot
      D3DRB6, Q53G45, Q96IV7, Q9H605, Q9H6R6
      UniProtKB/TrEMBL
      A0A804HJ80
      Related
      ENSP00000507009.1, ENST00000684507.1
      Conserved Domains (2) summary
      pfam01529
      Location:95 → 241
      DHHC; DHHC palmitoyltransferase
      cl17036
      Location:317 → 394
      SH3; Src Homology 3 domain superfamily

    5. NM_001351085.2 → NP_001338014.1  palmitoyltransferase ZDHHC6 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AI695150, AK025605, BP378060, BX647270, DA745043
      Conserved Domains (2) summary
      cl17036
      Location:213 → 292
      SH3; Src Homology 3 domain superfamily
      cl19890
      Location:49 → 137
      DHHC; DHHC palmitoyltransferase

    6. NM_001351086.2 → NP_001338015.1  palmitoyltransferase ZDHHC6 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AI695150, AK025605, BP378060, BX647270, DA745043, DB122344
      Conserved Domains (1) summary
      cl19890
      Location:52 → 133
      zf-DHHC; DHHC palmitoyltransferase

    7. NM_001363544.2 → NP_001350473.1  palmitoyltransferase ZDHHC6 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC022018, AL157786
      Consensus CDS
      CCDS86144.1
      UniProtKB/TrEMBL
      A0A0D9SEX5, A0A804HL63
      Related
      ENSP00000507679.1, ENST00000682267.1
      Conserved Domains (1) summary
      pfam01529
      Location:95 → 241
      DHHC; DHHC palmitoyltransferase

    8. NM_001411066.1 → NP_001397995.1  palmitoyltransferase ZDHHC6 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC022018
      Consensus CDS
      CCDS91345.1
      UniProtKB/TrEMBL
      A0A804HJ40

    9. NM_022494.3 → NP_071939.1  palmitoyltransferase ZDHHC6 isoform 1

      See identical proteins and their annotated locations for NP_071939.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1, 3, 4 and 5 encode the same protein (isoform 1).
      Source sequence(s)
      AI695150, AK025605, BX647270, DA745043
      Consensus CDS
      CCDS7574.1
      UniProtKB/Swiss-Prot
      D3DRB6, Q53G45, Q96IV7, Q9H605, Q9H6R6
      UniProtKB/TrEMBL
      A0A804HJ80
      Related
      ENSP00000358413.3, ENST00000369405.7
      Conserved Domains (2) summary
      pfam01529
      Location:95 → 241
      DHHC; DHHC palmitoyltransferase
      cl17036
      Location:317 → 394
      SH3; Src Homology 3 domain superfamily

    RNA

    1. NR_147045.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022018, AI695150, AK025605, AW751101, BX647270, DA745043
      Related
      ENST00000684173.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      112424412..112447572 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047425653.1 → XP_047281609.1  palmitoyltransferase ZDHHC6 isoform X2

      UniProtKB/TrEMBL
      A0A0D9SEX5

    2. XM_047425660.1 → XP_047281616.1  palmitoyltransferase ZDHHC6 isoform X9

    3. XM_017016566.3 → XP_016872055.1  palmitoyltransferase ZDHHC6 isoform X3

      UniProtKB/TrEMBL
      A0A804HL63

    4. XM_047425657.1 → XP_047281613.1  palmitoyltransferase ZDHHC6 isoform X6

    5. XM_011540091.3 → XP_011538393.1  palmitoyltransferase ZDHHC6 isoform X2

      UniProtKB/TrEMBL
      A0A0D9SEX5, A0A804HL63
      Related
      ENSP00000508215.1, ENST00000683505.1
      Conserved Domains (1) summary
      pfam01529
      Location:95 → 241
      DHHC; DHHC palmitoyltransferase

    6. XM_017016564.3 → XP_016872053.1  palmitoyltransferase ZDHHC6 isoform X2

      UniProtKB/TrEMBL
      A0A0D9SEX5, A0A804HL63
      Related
      ENSP00000486105.1, ENST00000626395.2
      Conserved Domains (1) summary
      pfam01529
      Location:95 → 241
      DHHC; DHHC palmitoyltransferase

    7. XM_047425654.1 → XP_047281610.1  palmitoyltransferase ZDHHC6 isoform X2

      UniProtKB/TrEMBL
      A0A0D9SEX5
      Related
      ENSP00000508135.1, ENST00000682839.1

    8. XM_047425659.1 → XP_047281615.1  palmitoyltransferase ZDHHC6 isoform X8

    9. XM_017016563.3 → XP_016872052.1  palmitoyltransferase ZDHHC6 isoform X1

      UniProtKB/TrEMBL
      A0A804HJ80
      Conserved Domains (1) summary
      pfam01529
      Location:91 → 237
      zf-DHHC; DHHC palmitoyltransferase

    10. XM_017016568.3 → XP_016872057.1  palmitoyltransferase ZDHHC6 isoform X8

      Conserved Domains (2) summary
      cl17036
      Location:213 → 292
      SH3; Src Homology 3 domain superfamily
      cl19890
      Location:49 → 137
      DHHC; DHHC palmitoyltransferase

    11. XM_017016567.3 → XP_016872056.1  palmitoyltransferase ZDHHC6 isoform X5

      UniProtKB/TrEMBL
      A0A804HJ80

    12. XM_011540095.4 → XP_011538397.1  palmitoyltransferase ZDHHC6 isoform X10

    13. XM_006717949.5 → XP_006718012.1  palmitoyltransferase ZDHHC6 isoform X4

      See identical proteins and their annotated locations for XP_006718012.1

      UniProtKB/TrEMBL
      A0A804HJ40, A0A804HJ80
      Related
      ENSP00000507345.1, ENST00000682195.1
      Conserved Domains (2) summary
      pfam01529
      Location:95 → 188
      zf-DHHC; DHHC palmitoyltransferase
      cl17036
      Location:263 → 342
      SH3; Src Homology 3 domain superfamily

    14. XM_017016562.3 → XP_016872051.1  palmitoyltransferase ZDHHC6 isoform X1

      UniProtKB/TrEMBL
      A0A804HJ80
      Conserved Domains (1) summary
      pfam01529
      Location:91 → 237
      zf-DHHC; DHHC palmitoyltransferase

    15. XM_047425661.1 → XP_047281617.1  palmitoyltransferase ZDHHC6 isoform X10

    16. XM_011540093.3 → XP_011538395.1  palmitoyltransferase ZDHHC6 isoform X8

      See identical proteins and their annotated locations for XP_011538395.1

      Conserved Domains (2) summary
      cl17036
      Location:213 → 292
      SH3; Src Homology 3 domain superfamily
      cl19890
      Location:49 → 137
      DHHC; DHHC palmitoyltransferase

    17. XM_047425655.1 → XP_047281611.1  palmitoyltransferase ZDHHC6 isoform X4

      UniProtKB/TrEMBL
      A0A804HJ40

    18. XM_017016569.2 → XP_016872058.1  palmitoyltransferase ZDHHC6 isoform X11

    19. XM_047425658.1 → XP_047281614.1  palmitoyltransferase ZDHHC6 isoform X7

    RNA

    1. XR_007061983.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      113315089..113338239 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054366602.1 → XP_054222577.1  palmitoyltransferase ZDHHC6 isoform X2

      UniProtKB/TrEMBL
      A0A0D9SEX5

    2. XM_054366613.1 → XP_054222588.1  palmitoyltransferase ZDHHC6 isoform X9

    3. XM_054366604.1 → XP_054222579.1  palmitoyltransferase ZDHHC6 isoform X3

    4. XM_054366600.1 → XP_054222575.1  palmitoyltransferase ZDHHC6 isoform X2

      UniProtKB/TrEMBL
      A0A0D9SEX5

    5. XM_054366601.1 → XP_054222576.1  palmitoyltransferase ZDHHC6 isoform X2

      UniProtKB/TrEMBL
      A0A0D9SEX5

    6. XM_054366608.1 → XP_054222583.1  palmitoyltransferase ZDHHC6 isoform X6

    7. XM_054366603.1 → XP_054222578.1  palmitoyltransferase ZDHHC6 isoform X2

      UniProtKB/TrEMBL
      A0A0D9SEX5

    8. XM_054366612.1 → XP_054222587.1  palmitoyltransferase ZDHHC6 isoform X8

    9. XM_054366599.1 → XP_054222574.1  palmitoyltransferase ZDHHC6 isoform X1

    10. XM_054366610.1 → XP_054222585.1  palmitoyltransferase ZDHHC6 isoform X8

    11. XM_054366607.1 → XP_054222582.1  palmitoyltransferase ZDHHC6 isoform X5

    12. XM_054366614.1 → XP_054222589.1  palmitoyltransferase ZDHHC6 isoform X10

    13. XM_054366605.1 → XP_054222580.1  palmitoyltransferase ZDHHC6 isoform X4

      UniProtKB/TrEMBL
      A0A804HJ40

    14. XM_054366598.1 → XP_054222573.1  palmitoyltransferase ZDHHC6 isoform X1

    15. XM_054366615.1 → XP_054222590.1  palmitoyltransferase ZDHHC6 isoform X10

    16. XM_054366611.1 → XP_054222586.1  palmitoyltransferase ZDHHC6 isoform X8

    17. XM_054366606.1 → XP_054222581.1  palmitoyltransferase ZDHHC6 isoform X4

      UniProtKB/TrEMBL
      A0A804HJ40

    18. XM_054366616.1 → XP_054222591.1  palmitoyltransferase ZDHHC6 isoform X11

    19. XM_054366609.1 → XP_054222584.1  palmitoyltransferase ZDHHC6 isoform X7

    RNA

    1. XR_008488252.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9H6R6.1 GenPept UniProtKB/Swiss-Prot:Q9H6R6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools