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    LINC02149 long intergenic non-protein coding RNA 2149 [ Homo sapiens (human) ]

    Gene ID: 101929454, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02149provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2149provided by HGNC
    Primary source
    HGNC:HGNC:53010
    See related
    AllianceGenome:HGNC:53010
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02149 in Genome Data Viewer
    Location:
    5p15.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (15191646..15266560, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (15131082..15206028, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (15191755..15266669, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986376 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22418 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22419 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:14996706-14996886 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22420 Neighboring gene U8 small nucleolar RNA Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:15132337-15132838 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:15271753-15272338 Neighboring gene nucleolar protein interacting with the FHA domain of MKI67 pseudogene Neighboring gene MARK2 pseudogene 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109944.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC002741

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      15191646..15266560 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      15131082..15206028 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)