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    Izumo4 IZUMO family member 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362832, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Izumo4provided by RGD
    Official Full Name
    IZUMO family member 4provided by RGD
    Primary source
    RGD:1564722
    See related
    EnsemblRapid:ENSRNOG00000031950 AllianceGenome:RGD:1564722
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564722
    Summary
    Orthologous to human IZUMO4 (IZUMO family member 4). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 136.5), Thymus (RPKM 27.2) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Izumo4 in Genome Data Viewer
    Location:
    7q11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (9657975..9661699, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (9007276..9010428, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (11873884..11878624, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479808 Neighboring gene adaptor related protein complex 3 subunit delta 1 Neighboring gene uncharacterized LOC120093774 Neighboring gene MOB kinase activator 3A Neighboring gene SUMO-conjugating enzyme UBC9-B-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Proteomic characterization of the human sperm nucleus. de Mateo S, et al. Proteomics, 2011 Jul. PMID 21630459

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    izumo sperm-egg fusion protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      9657975..9661699 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063264492.1 → XP_063120562.1  izumo sperm-egg fusion protein 4 isoform X3

    2. XM_017595154.3 → XP_017450643.1  izumo sperm-egg fusion protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZSN1
      Related
      ENSRNOP00000040709.5, ENSRNOT00000049766.6
      Conserved Domains (1) summary
      pfam15005
      Location:27 → 166
      IZUMO; Izumo sperm-egg fusion, Ig domain-associated

    3. XM_063264489.1 → XP_063120559.1  izumo sperm-egg fusion protein 4 isoform X1

    4. XM_063264491.1 → XP_063120561.1  izumo sperm-egg fusion protein 4 isoform X3

    5. XM_063264490.1 → XP_063120560.1  izumo sperm-egg fusion protein 4 isoform X2

    RNA

    1. XR_010053555.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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